Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-03-23 | CMake: ensure RPATH is always set for libcrystfel | Thomas White | |
This helps with finding dependencies installed in non-system locations. | |||
2021-03-23 | CMake: formatting, use pkg_check_modules instead of pkg_search_module | Thomas White | |
2021-03-22 | Allow HDF5 path substitution when there are too many placeholder values | Thomas White | |
This allows, for example, masks which have fewer % signs in their HDF5 locations than the main data. | |||
2021-03-22 | FromFile indexer: Fix prototype | Thomas White | |
2021-03-19 | Merge branch 'tom/fromfile' | Thomas White | |
2021-03-19 | Update AUTHORS and README.md | Thomas White | |
2021-03-19 | FromFile indexer: add copyright notice | Thomas White | |
There is presumably an MPSD that also needs to be added. | |||
2021-03-19 | FromFile indexer: Take account of working directory | Thomas White | |
2021-03-19 | FromFile indexer: New parser and simplification of code | Thomas White | |
Significant change: the solution file must now come with the lattice type, centering and (if applicable) unique axis information at the end of each line, e.g. 'cI' (cubic I), 'mAb' (monoclinic A, unique axis b). | |||
2021-03-19 | Fix mode of uthash.h | Thomas White | |
2021-03-19 | FromFile indexer: Option processing | Thomas White | |
This give FromFile its own private command-lien option processing, like the other indexers. It removes the ability to auto-generate the solution filename, but I don't think there's a way to do that without breaking abstractions. | |||
2021-03-17 | CrystFELImageView: Fix zoom limits | Thomas White | |
2021-03-17 | GUI: Show beam centre more clearly, and optionally | Thomas White | |
2021-03-17 | Add missing conversion to pixels for detector_shift_{x,y} | Thomas White | |
2021-03-17 | Factorise panel in create_detgeom | Thomas White | |
2021-03-16 | CrystFELImageView: Avoid crash when scrolling after image load failure | Thomas White | |
2021-03-16 | Add CONTRIBUTING.md | Thomas White | |
2021-03-16 | get_hkl: Fix logic for loading unit cell | Thomas White | |
2021-03-16 | get_hkl: Add options to export to MTZ and XDS | Thomas White | |
2021-03-16 | Move MTZ and XDS export to libcrystfel | Thomas White | |
2021-03-15 | GUI: Add interface for --fix-profile-radius and --fix-divergence | Thomas White | |
2021-03-12 | FromFile indexer: Add skeleton cleanup procedure | Thomas White | |
2021-03-12 | Remove .gitignore | Thomas White | |
2021-03-12 | FromFile indexer: Update for new event ID in image structure | Thomas White | |
2021-03-12 | FromFile indexer: Remove unnecessary casting/memset | Thomas White | |
2021-03-12 | GUI: Add NULL filename for FromFile indexing (which isn't used here) | Thomas White | |
2021-03-12 | FromFile indexer: Remove getcwd() | Thomas White | |
It's only used for some error messages, and it doesn't compile anyway. | |||
2021-03-12 | FromFile indexer: Remove update_detector | Thomas White | |
Everything should use the per-crystal detector shift now. | |||
2021-03-12 | FromFile indexer: Add missing semicolons | Thomas White | |
2021-03-12 | FromFile indexer: Strip trailing whitespace and sort out formatting | Thomas White | |
2021-03-12 | Clean up after merge | Thomas White | |
2021-03-12 | FromFile indexer: Move to libcrystfel/src/indexers | Thomas White | |
Also adds to meson.build | |||
2021-03-12 | Merge branch 'pascal/electrons' | Thomas White | |
2021-03-11 | indexamajig: Use static wavelength from DataTemplate as estimate | Thomas White | |
If the geometry file contains a literal wavelength, then let's use it. That's better than nagging the user for a --wavelength-estimate. | |||
2021-03-11 | Add some warnings | Thomas White | |
2021-03-11 | indexamajig(1): Fix formatting and spelling | Thomas White | |
2021-03-11 | indexamajig: Add --max-indexer-threads | Thomas White | |
This is a more general replacement for --pinkIndexer-thread-count. | |||
2021-03-11 | PinkIndexer: Allocate peak lists when indexing | Thomas White | |
There doesn't seem to be any point in allocating them earlier, except to make space for some nice bugs. | |||
2021-03-11 | PinkIndexer: Remove unnecessary cast | Thomas White | |
2021-03-11 | indexamajig: Remove misleading message | Thomas White | |
Spectrum file is currently not supported at all. Maybe later. | |||
2021-03-11 | PinkIndexer: Remove wide bandwidth stuff | Thomas White | |
This will return later in a more centralised form, if we decide to work further on wide bandwidth. | |||
2021-03-11 | PinkIndexer: Use fake camera length for detector refinement | Thomas White | |
... and calculate the real value afterwards, checking that the detector is really flat enough for it to work. | |||
2021-03-11 | PinkIndexer: Remove custom indexing checks | Thomas White | |
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it. | |||
2021-03-11 | Re-enable PinkIndexer | Thomas White | |
2021-03-11 | detgeom_transform_coords: Take an additional detector shift | Thomas White | |
This allows the refined detector position to be used in a lot of places. | |||
2021-03-11 | Update copyright dates in libcrystfel/src/indexers | Thomas White | |
2021-03-11 | PinkIndexer: Don't use ImageFeature->rx,ry,rz | Thomas White | |
This brings it up to date after e7cf3911104f. | |||
2021-03-11 | setup_indexing: Remove dtempl | Thomas White | |
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object. | |||
2021-03-11 | indexamajig: Add --wavelength-estimate | Thomas White | |
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy | |||
2021-03-09 | Add the ability to use multiple bad pixel masks at once | Thomas White | |