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2023-09-21indexamajig: Increase buffer size for Mille filenameThomas White
With the prefix, it can get quite long.
2023-09-21Update manual pagesThomas White
2023-09-20crystfel_geometry(5): Convert to Markdown and re-structureThomas White
Still some work to be done here, but it's already an improvement.
2023-09-20CI: Add Pandoc to build-centos7Thomas White
We'd like the manual pages to be built for the central deployment.
2023-09-20indexamajig: Add --mille-dirThomas White
2023-09-20Update INSTALL.mdThomas White
2023-09-20Add manual page for align_detectorThomas White
2023-09-20Examples: Remove rigid groupsThomas White
These are now ignored, but shouldn't be in the examples.
2023-09-20Fix inappropriate use of r_devThomas White
These should be get_exerr. Following 1ae9a4582, the r_dev values are no longer useful physical quantities, only a refinement target function. This was causing the last few Git versions to not predict any reflections at all!
2023-09-19CI: Download only the required artifacts for each jobThomas White
2023-09-19Meson: Remove unnecessary subproject pokingThomas White
The variable isn't needed, and just serves to break the build when Fortran isn't available.
2023-09-19Prediction refinement: Weaken restraint and reduce number of iterationsThomas White
The restraint was way too strong, after the last round of tweaking. With a weaker restraint, the algorithm converges very quickly - it's practically linear - so ten iterations is way too much.
2023-09-19CI: Remove gfortran from minimal build testThomas White
2023-09-18Use a*a instead of pow(a, 2)Thomas White
2023-09-18Meson: Make Millepede subproject optionalThomas White
This should help avoid confusion when people find they need a Fortran compiler.
2023-09-18Build EXC_WEIGHT into r_devThomas White
This avoids weird weighting factors everywhere and much confusion. Since Millepede doesn't have an easy way of weighting measurements (only via altering the ESD values), treating it as a units conversion seems to be easier.
2023-09-18pred_residual: Remove vestigial conversion to metresThomas White
We want the residual in pixels, as described in the comment for EXC_WEIGHT. This routine is only used for displaying the total residuals, not for the real minimisation maths. However, we need to be clear.
2023-09-18tests/gradient_*: Use r_dev instead of get_exerrThomas White
We explicitly want the gradient of the residual, nothing else.
2023-09-18Prediction refinement: Record excitation error and distance residuals separatelyThomas White
2023-09-18Add gfortran to DockerfileThomas White
Needed for Millepede
2023-09-18Prediction refinement: Record initial residual and total shiftsThomas White
2023-09-18Merge branch 'millepede'Thomas White
Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/3 Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/29
2023-09-18indexamajig: Add documentation for --milleThomas White
2023-09-18indexamajig: Add missing documentation for --indexing=fileThomas White
Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/85
2023-09-18Convert indexamajig(1) manual page to MarkdownThomas White
2023-09-13cell_explorer: Update "about" boxThomas White
2023-09-13cell_explorer: Add "clear selection"Thomas White
2023-09-12Fix nominal space group when exporting MTZ in PG 2Thomas White
2023-09-12Fix sense of panel rotationsThomas White
Should always be a right-hand grip rotation around positive axis direction.
2023-09-12Seedee: Handle format i4<Thomas White
2023-09-12adjust_detector(1): Fix typosThomas White
2023-09-11Remove vestigial tests/gradient_cell_asx.cThomas White
2023-09-01CI: Add Pandoc to build-mesonThomas White
2023-09-01Meson: Make Pandoc usage optionalThomas White
2023-09-01Manual page for adjust_detector (using Pandoc)Thomas White
2023-08-31scripts/detector-shift: Add placeholder messageThomas White
We don't do per-crystal beam center refinement any more, so it won't work.
2023-08-30Add excitation error to Millepede data (local-only measurement)Thomas White
2023-08-30FussinessThomas White
2023-08-30align_detector: Don't write constraints for fixed parametersThomas White
This avoids a warning from Millepede, and means we no longer need "skipemptycons" - which will make it easier to spot future problems.
2023-08-30align_detector: Add --out-of-planeThomas White
2023-08-30Meson: Update wrap for cJSONThomas White
2023-08-29CI: Fix 'meson' command, add gcc-gfortranThomas White
Fortran compiler is needed for Millepede.
2023-08-29Meson: Simplify Millepede build systemThomas White
There are no dependencies, only a subproject via wrap.
2023-08-29Automatically add top-level group for single-panel detectorsThomas White
2023-08-29Meson: Remove old OpenCL optionThomas White
2023-08-28align_detector: stat() portabilityThomas White
2023-08-25align_detector: Output formattingThomas White
2023-08-25align_detector: Check for mixed-up Mille filesThomas White
2023-08-24align_detector: Refine x,y position and z-rotation onlyThomas White
2023-08-24align_detector: Delete old results file before running pedeThomas White
It doesn't always return an error code.
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