CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2016-07-01	No more slab-relative coordinates in libcrystfel	Thomas White

2016-05-20	Fixed problem with parsing of geometry file	Valerio Mariani

2016-05-19	integrate_peak(): Trap if pk_total=0	Thomas White

2016-05-13	{check,compare}_hkl: Add warnings when using potentially silly option choices	Thomas White

2016-05-12	geoptimiser: Only do g_type_init() if HAVE_SAVE_TO_PNG	Thomas White

2016-04-21	Use correct dataspace when reading HDF5 strings	Thomas White

2016-04-13	Fix event enumeration	Thomas White
	I broke it. Sorry about that.
2016-04-13	Formatting	Thomas White

2016-04-12	Merge branch 'tom/testing'	Thomas White

2016-04-01	Add adu_per_photon (distinct from adu_per_eV)	Thomas White

2016-04-01	Remove "Too few paired peaks" warnings	Thomas White
	We know that the prediction refinement is working. These "warnings" are really just synonyms for "indexing failed for this pattern". No big deal.
2016-04-01	Fix silly bugs and tidy up	Thomas White

2016-03-31	Handle placeholders in --hdf5-peaks	Thomas White

2016-03-24	Fussiness/formatting	Thomas White

2016-03-24	Simplify event enumeration a bit	Thomas White

2016-03-24	event_path_placeholder_subst(): Simplify a bit	Thomas White

2016-03-24	Don't use %C conversion	Thomas White

2016-03-22	scripts/fg-graph: Remove "monochrome"	Thomas White
	Not sure what this is doing here, or why it wasn't noticed before...
2016-03-22	scripts/detector-shift: Show a 'heat map' histogram of detector offset	Thomas White

2016-03-22	scripts/detector-shift: Handle panel resolutions correctly	Thomas White

2016-03-22	Workaround for CLOCK_MONOTONIC_RAW on old Linux (<2.6.28)	Thomas White

2016-03-21	This is CrystFEL 0.6.20.6.2	Thomas White

2016-03-21	Make scripts/gaincal-to-saturation-map executable	Thomas White

2016-03-18	cell_explorer: Switch font back to Serif (from Liberation Serif)	Thomas White
	This makes the Greek letters come up at SLAC.... again. Reverts 779d87eb08fa2b185c43a82814aecc0e1a00eef9.
2016-03-18	Update docs	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-18	Add scripts/gaincal-to-saturation-map	Thomas White

2016-03-18	Tiny clean-ups	Thomas White

2016-03-15	write_detector_geometry_2(): Clean up	Thomas White
	Fixes CRYS-138: hdfsee wipes geometry if new file is saved over old one
2016-03-14	Add SA_RESTART to signal handlers	Thomas White
	Fixes corrupted output when heavily multi-processing.
2016-03-01	scripts/check-peak-detection: Initialise $event	Thomas White

2016-03-01	mark_resolution_range_as_bad(): Skip if nothing to do	Thomas White
	This speeds up indexamajig quite a bit
2016-03-01	indexamajig: Wall clock profiling	Thomas White

2016-02-29	More output when reading reflections failed	Thomas White

2016-02-29	Don't predict 000	Thomas White

2016-02-29	asdf: Check array bounds before using	Thomas White

2016-02-29	Formatting	Thomas White

2016-02-23	hdfsee: Fix panel/feature names in numbers window	Thomas White

2016-02-23	Fixed bug with memspace size in write_location	Valerio Mariani

2016-02-12	Update manual	Thomas White

2016-02-09	pattern_sim: Initialise stuff for powder HDF5	Thomas White

2016-02-09	Fix a NULL dereference	Thomas White

2016-02-08	Formatting	Thomas White

2016-02-05	Update docs	Thomas White

2016-02-05	felix: fix seg fault	Ken Beyerlein

2016-02-05	partialator: add --output-every-cycle option to write .hkl* and .params ↵	Keitaro Yamashita
	files in every cycle
2016-02-03	Set initial prediction parameters even when not doing prediction refinement	Thomas White
	Silly bug fix. Beamtime programming FTL.
2016-01-30	Revert "Allow peak check to pass just by accounting for more than 5 peaks"	Thomas White
	This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later.
2016-01-30	indexamajig: Restore --no-refine	Thomas White
	Adds yet another indexing option...
2016-01-29	Perform prediction refinement straight after indexing	Thomas White
	This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working.