Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-03-16 | Move MTZ and XDS export to libcrystfel | Thomas White | |
2021-03-15 | GUI: Add interface for --fix-profile-radius and --fix-divergence | Thomas White | |
2021-03-12 | FromFile indexer: Add skeleton cleanup procedure | Thomas White | |
2021-03-12 | Remove .gitignore | Thomas White | |
2021-03-12 | FromFile indexer: Update for new event ID in image structure | Thomas White | |
2021-03-12 | FromFile indexer: Remove unnecessary casting/memset | Thomas White | |
2021-03-12 | GUI: Add NULL filename for FromFile indexing (which isn't used here) | Thomas White | |
2021-03-12 | FromFile indexer: Remove getcwd() | Thomas White | |
It's only used for some error messages, and it doesn't compile anyway. | |||
2021-03-12 | FromFile indexer: Remove update_detector | Thomas White | |
Everything should use the per-crystal detector shift now. | |||
2021-03-12 | FromFile indexer: Add missing semicolons | Thomas White | |
2021-03-12 | FromFile indexer: Strip trailing whitespace and sort out formatting | Thomas White | |
2021-03-12 | Clean up after merge | Thomas White | |
2021-03-12 | FromFile indexer: Move to libcrystfel/src/indexers | Thomas White | |
Also adds to meson.build | |||
2021-03-12 | Merge branch 'pascal/electrons' | Thomas White | |
2021-03-11 | indexamajig: Use static wavelength from DataTemplate as estimate | Thomas White | |
If the geometry file contains a literal wavelength, then let's use it. That's better than nagging the user for a --wavelength-estimate. | |||
2021-03-11 | Add some warnings | Thomas White | |
2021-03-11 | indexamajig(1): Fix formatting and spelling | Thomas White | |
2021-03-11 | indexamajig: Add --max-indexer-threads | Thomas White | |
This is a more general replacement for --pinkIndexer-thread-count. | |||
2021-03-11 | PinkIndexer: Allocate peak lists when indexing | Thomas White | |
There doesn't seem to be any point in allocating them earlier, except to make space for some nice bugs. | |||
2021-03-11 | PinkIndexer: Remove unnecessary cast | Thomas White | |
2021-03-11 | indexamajig: Remove misleading message | Thomas White | |
Spectrum file is currently not supported at all. Maybe later. | |||
2021-03-11 | PinkIndexer: Remove wide bandwidth stuff | Thomas White | |
This will return later in a more centralised form, if we decide to work further on wide bandwidth. | |||
2021-03-11 | PinkIndexer: Use fake camera length for detector refinement | Thomas White | |
... and calculate the real value afterwards, checking that the detector is really flat enough for it to work. | |||
2021-03-11 | PinkIndexer: Remove custom indexing checks | Thomas White | |
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it. | |||
2021-03-11 | Re-enable PinkIndexer | Thomas White | |
2021-03-11 | detgeom_transform_coords: Take an additional detector shift | Thomas White | |
This allows the refined detector position to be used in a lot of places. | |||
2021-03-11 | Update copyright dates in libcrystfel/src/indexers | Thomas White | |
2021-03-11 | PinkIndexer: Don't use ImageFeature->rx,ry,rz | Thomas White | |
This brings it up to date after e7cf3911104f. | |||
2021-03-11 | setup_indexing: Remove dtempl | Thomas White | |
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object. | |||
2021-03-11 | indexamajig: Add --wavelength-estimate | Thomas White | |
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy | |||
2021-03-09 | Add the ability to use multiple bad pixel masks at once | Thomas White | |
2021-03-05 | Mosflm: Add -n option | Thomas White | |
This tells Mosflm not to try to load environ.def and defaults.def. We don't need either. | |||
2021-03-05 | Switch to markdown for README | Thomas White | |
2021-03-05 | Remove TIFF | Thomas White | |
Nothing uses it any more. | |||
2021-03-05 | Mass update of copyright dates in source code comments | Thomas White | |
2021-03-04 | SLURM: Better handling of job cancellation/crashing | Thomas White | |
2021-03-04 | SLURM: Cancel job by calling scancel | Thomas White | |
The API for cancelling a job seems to be Complicated. The source code for scancel is nearly a thousand lines long! The API also seems to have just changed. So, let's just run scancel and be done with it. | |||
2021-03-04 | SLURM: Add one to serial offsets | Thomas White | |
They should start from 1, not 0. | |||
2021-03-04 | SLURM: Set serial offset for indexamajig jobs | Thomas White | |
2021-03-04 | GUI: When starting indexing, prefix relative filenames with ../ | Thomas White | |
2021-03-04 | read_number_processed: Only look at end of log file | Thomas White | |
2021-03-04 | SLURM: Clean up some exit paths | Thomas White | |
2021-03-04 | start_slurm_job: Save the real stderr filename | Thomas White | |
2021-03-04 | SLURM: Implement indexing progress monitoring for job arrays | Thomas White | |
2021-03-03 | GUI: Submit indexing jobs as job arrays, not individual jobs | Thomas White | |
2021-03-03 | SLURM: Remove unused stuff | Thomas White | |
2021-03-03 | SLURM: Add access to account and feature constraints | Thomas White | |
2021-03-03 | SLURM: Factorise common options even more | Thomas White | |
2021-03-03 | Add get_text_or_null | Thomas White | |
2021-03-03 | SLURM: Factorise widget creation for common backend options | Thomas White | |