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2021-03-11PinkIndexer: Remove custom indexing checksThomas White
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it.
2021-03-11Re-enable PinkIndexerThomas White
2021-03-11detgeom_transform_coords: Take an additional detector shiftThomas White
This allows the refined detector position to be used in a lot of places.
2021-03-11Update copyright dates in libcrystfel/src/indexersThomas White
2021-03-11PinkIndexer: Don't use ImageFeature->rx,ry,rzThomas White
This brings it up to date after e7cf3911104f.
2021-03-11setup_indexing: Remove dtemplThomas White
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object.
2021-03-11indexamajig: Add --wavelength-estimateThomas White
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy
2021-03-09Add the ability to use multiple bad pixel masks at onceThomas White
2021-03-05Mosflm: Add -n optionThomas White
This tells Mosflm not to try to load environ.def and defaults.def. We don't need either.
2021-03-05Switch to markdown for READMEThomas White
2021-03-05Remove TIFFThomas White
Nothing uses it any more.
2021-03-05Mass update of copyright dates in source code commentsThomas White
2021-03-04SLURM: Better handling of job cancellation/crashingThomas White
2021-03-04SLURM: Cancel job by calling scancelThomas White
The API for cancelling a job seems to be Complicated. The source code for scancel is nearly a thousand lines long! The API also seems to have just changed. So, let's just run scancel and be done with it.
2021-03-04SLURM: Add one to serial offsetsThomas White
They should start from 1, not 0.
2021-03-04SLURM: Set serial offset for indexamajig jobsThomas White
2021-03-04GUI: When starting indexing, prefix relative filenames with ../Thomas White
2021-03-04read_number_processed: Only look at end of log fileThomas White
2021-03-04SLURM: Clean up some exit pathsThomas White
2021-03-04start_slurm_job: Save the real stderr filenameThomas White
2021-03-04SLURM: Implement indexing progress monitoring for job arraysThomas White
2021-03-03GUI: Submit indexing jobs as job arrays, not individual jobsThomas White
2021-03-03SLURM: Remove unused stuffThomas White
2021-03-03SLURM: Add access to account and feature constraintsThomas White
2021-03-03SLURM: Factorise common options even moreThomas White
2021-03-03Add get_text_or_nullThomas White
2021-03-03SLURM: Factorise widget creation for common backend optionsThomas White
2021-03-02GUI: Add menu item to clear logThomas White
2021-03-02CrystFELImageView: Set limits on zoomingThomas White
2021-03-02GUI: Add tooltips to navigation buttonsThomas White
2021-03-02GUI: Add tooltips for peak search parametersThomas White
2021-03-01data_template_new_from_string: Fail gracefully if fs/ss bad region lacks ↵Thomas White
panel name Fixes CRYS-245
2021-03-01GUI: Fix counting of processed frames during indexingThomas White
2021-03-01Local BE: Write a script and run itThomas White
This easily gives us the stdout.log and stderr.log needed for monitoring the job.
2021-03-01GUI: Pass --peak-radius to indexamajigThomas White
Another one missed out before.
2021-03-01GUI: Pass --int-radius to indexamajigThomas White
Whoops - this was missed out before. This also reduces the precision displayed in the dialog box to reflect what is actually passed to indexamajig.
2021-03-01GUI: Add lots of tooltipsThomas White
2021-03-01GUI: Reject job names containing path separatorsThomas White
2021-03-01GUI: Fix some command-line options for indexamajigThomas White
2021-03-01GUI: Add history list for random image selectionThomas White
2021-02-26GUI: Automatically generate new job namesThomas White
2021-02-26Remove unused variablesThomas White
2021-02-26GUI: Delay connecting signals until entire import window is readyThomas White
2021-02-26CrystFELImageView: Set need_recentre at startThomas White
2021-02-25GUI: Factorise force_{peaks,refls}_onThomas White
This should help avoid them getting out of sync. Again.
2021-02-25GUI: Make sure items under View menu are set correctly at the startThomas White
2021-02-25GUI: Improve image info barThomas White
(...and work through horrific circular logic during creation)
2021-02-25GUI: Complain more loudly if geometry can't be loadedThomas White
2021-02-25GUI: Geometry load/replace logicThomas White
2021-02-25GUI: Implement optional dumping of old resultsThomas White
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