CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2015-04-20	Tweak rejection	Thomas White

2015-04-20	Add a simple rejection criterion to the prediction refinement	Thomas White

2015-04-20	New pairing procedure for prediction refinement (and auto-R)	Thomas White

2015-04-20	Fix L gradients (and tidy up unnecessary variables)	Thomas White

2015-04-20	Improve and fix scripts/detector-shift	Thomas White
	Because of a bug in the regexp, it did not apply the shifts to all panels.
2015-04-20	Should update clen, not coffset	Thomas White

2015-04-20	Avoid testing gradients which don't make sense	Thomas White

2015-04-20	Fix gradients	Thomas White

2015-04-20	plot-detector-shift: More improvements	Thomas White

2015-04-20	scripts/plot-detector-shift: Fix aspect ratio, general improvements	Thomas White

2015-04-20	scripts/plot-detector-shift: Remove silly vertical line	Thomas White

2015-04-20	Increase precision of det_shift and clen_shift	Thomas White

2015-04-20	indexamajig: Reset indexing method if all crystals fail integration	Thomas White

2015-04-20	indexamajig: Add --no-refine	Thomas White

2015-04-20	Disable paired peak output for now	Thomas White

2015-04-20	Output paired peaks for testing	Thomas White

2015-04-20	Revert to stingy spot selection for prediction refinement	Thomas White

2015-04-20	More generous inclusion of reflections for prediction refinement / auto R	Thomas White

2015-04-20	Add new scripts for detector shifts	Thomas White

2015-04-20	Fix comment	Thomas White

2015-04-20	Refine detector position in prediction refinement	Thomas White

2015-04-20	Add GPARAM_DETX, GPARAM_DETY and GPARAM_CLEN	Thomas White

2015-04-20	Improve error message	Thomas White

2015-04-20	Fussiness	Thomas White

2015-04-20	refine_prediction(): Improve error handling	Thomas White

2015-04-20	refine_{radius,prediction}: unite common code (pair_peaks), avoid ↵	Thomas White
	preliminary integration round
2015-04-20	Fussiness	Thomas White

2015-04-20	Factorise dr/da part of gradient calculation for PR and prediction	Thomas White

2015-04-20	Update .gitignore	Thomas White

2015-04-20	Add plot-predict-refine and plot-radius-resolution	Thomas White

2015-04-20	Remove debugging statements	Thomas White

2015-04-20	Record profile radius before and after refinement	Thomas White

2015-04-20	Throw out crystals which could not be refined	Thomas White

2015-04-20	Tweak debug	Thomas White
	Can't use STATUS here if STATUS is also used inside residual() - this leads to a nice deadlock.
2015-04-20	Remove debug	Thomas White

2015-04-20	Tweak weightings and cutoffs	Thomas White

2015-04-20	Split x and y terms in residual	Thomas White

2015-04-20	Make panel assignments invariant during prediction- and post-refinement	Thomas White
	Reflections appearing and disappearing are problematic when trying to do a least-squares refinement. Therefore, assume that reflections stay on panel and keep them under consideration even if their partialities go to zero (i.e. they drift off Bragg). This should stabilise both refinements, and simplifies quite a lot of code. Collateral "damage": the old "select_intersection()" is now gone.
2015-04-20	WIP on refinement guts	Thomas White

2015-04-20	Add gradient test program and fix gradients	Thomas White

2015-04-20	Add prediction refinement	Thomas White

2015-04-20	pattern_sim: Normalise spectrum to avoid intensity decreasing with number of ↵	Thomas White
	samples
2015-04-20	Update AUTHORS	Thomas White

2015-04-20	open_stream_for_read: read stream from stdin when filename is "-".	Keitaro Yamashita

2015-04-20	Add INDEXING_DEBUG	Thomas White

2015-04-20	partial_sim: Initialise stuff	Thomas White

2015-04-20	partial_sim: Complain if geometry contains HDF5 references	Thomas White

2015-04-20	partial_sim: Update --help and manual	Thomas White

2015-04-20	Fix a string overflow vulnerability, and banish extract_f_from_stuff()	Thomas White

2015-04-20	Crystal: initialise user flag	Thomas White