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2017-07-21Fix option names for TakeTwo parametersThomas White
2017-07-21Add a warning about mask_file when mask is not setThomas White
2017-07-20indexamajig(1): Give default values for TakeTwo optionsThomas White
2017-07-20Merge branch 'taketwo'Thomas White
2017-07-20Change units for TakeTwo parametersThomas White
2017-07-18Merge params code with whatever this git pull thingy contains because I ↵cppxfel
didn't pull first. Merge branch 'taketwo' of ssh://git.bitwiz.org.uk/crystfel into taketwo
2017-07-18Crashy for unknown reason, but have added the code for using custom params.cppxfel
2017-07-07Update ChangeLogThomas White
2017-07-07Convert angle_tol to radiansThomas White
2017-07-07Documentation for TakeTwo indexamajig optionsThomas White
2017-07-06indexamajig: Add TakeTwo-specific optionsThomas White
2017-07-06Fix typoThomas White
2017-07-06Merge branch 'master' into taketwoThomas White
2017-07-06Indexing engine private pointers should be void *Thomas White
2017-07-06Remove unnecessary headers and move an includeThomas White
2017-07-06Use void pointers for indexing engine private stuffThomas White
2017-07-06Update docsThomas White
2017-07-06Temporary fix for the geomptimiser not being able to optimize whole quadrantsValerio Mariani
2017-07-06Update to peakfinder8, with bug fixed and new functionality. Code synced ↵Valerio Mariani
with OnDA and Oleksandr's programs
2017-07-05Update docsThomas White
2017-07-05Rearrange quaternion declarations so that gtk-doc can copeThomas White
The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together.
2017-07-05Shoved a bunch of the stuff being passed from function to function into ↵cppxfel
TakeTwoCell, and shoved gsl_vector allocation into it as well to reduce alloc events
2017-07-04Add a missing newlineThomas White
2017-07-04Switch CBF support on by defaultThomas White
2017-07-04pattern_sim: Try all OpenCL platforms to find one with a GPU deviceThomas White
2017-07-04Check for CBF headers, even if they're somewhere weirdThomas White
2017-07-01Adding a cutoff for maximum allowed vectors (100,000) to stop Tom's computer ↵cppxfel
(and others) falling apart again.
2017-06-30Ridiculous ASCII art to increase prominance of citationcppxfel
2017-06-30Removed unnecessary returns and set functions to void, and removed ↵cppxfel
superfluous integer declaration
2017-06-30Didn't use C99 code, fixingcppxfel
2017-06-30Yet more speed fiddlescppxfel
2017-06-30Removed some code, fixed some code, and so on and so forthcppxfel
2017-06-29WARNING - profanity - uploading to my server so I can gvalgrindcppxfel
2017-06-29Disable a check which wasn't acted upon to measure impact on speedcppxfel
2017-06-29Should not limit to proceeding vectors only when a new spot may have been ↵cppxfel
included\!
2017-06-29Relaxation of tolerancescppxfel
2017-06-27indexamajig: Add --no-non-hits-in-streamThomas White
2017-06-27Dummy setup bits for INDEXING_NONEThomas White
This doesn't do much except for preventing a possibly confusing warning message about "Failed to prepare indexing method none". You can actually do --indexing=none,asdf, but don't tell anyone...
2017-06-27If prediction refinement fails, don't carry on and check the cellThomas White
Doing so results in one crystal being counted as bad twice, which messes up the logic which follows.
2017-06-23Accept either cbf/cbf.h or cbflib/cbf.hThomas White
You get cbflib/cbf.h if you install CBFlib from source, and cbf/cbf.h if using the package manager in Fedora, probably other systems as well. We definitely don't want to include the cbf or cbflib folder in the include path, because CBFlib may bring its own HDF5 headers, which we don't want to touch with a bargepole.
2017-06-21Update ChangeLogThomas White
2017-06-21Close more leftover HDF5 handlesThomas White
2017-06-21Don't compile CBF stuff without CBFlibThomas White
2017-06-21Close leftover HDF5 handlesThomas White
2017-06-21hdf5_read2(): Fix exit pathThomas White
Bad pixel map is not allocated at this point.
2017-06-21indexamajig: Add --min-peaks (basic hitfinder functionality)Thomas White
2017-06-21Merge branch 'tom/cbf'Thomas White
2017-06-19Reduced amount of gsl_matrix reallocationcppxfel
2017-06-19Changing cosine of angle to be most sensitive to 0.5 degreescppxfel
2017-06-19Add observed angle check back in...cppxfel