| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-07-12 | Zero-weight negative intensity peaks in prediction refinement | Thomas White | |
| Strongly negative peaks can occur if there are unmasked bad pixels. These cause the refinement to diverge badly. This change stabilises the refinement such that it works even in these cases. But of course, the real solution is to mask out those pixels. Negative intensity peaks are unlikely to show up "for real" in the peak search results (because we look for strong peaks!). However, if the intensity is negative, we aren't even sure that the peak exists at all and have no reason to assume it should be close to the Bragg condition. | |||
| 2022-07-07 | indexamajig: Remove separate waitpid() calls when cleaning up last processes | Thomas White | |
| 2022-07-07 | indexamajig: --asapo-wait-for-stream doesn't require an argument | Thomas White | |
| 2022-07-07 | indexamajig: Make sure data format is initialised | Thomas White | |
| 2022-07-06 | indexamajig: Reset z->request_sent after receiving ZMQ reply | Thomas White | |
| 2022-07-06 | indexamajig: Add timeout for ZMQ socket | Thomas White | |
| 2022-07-06 | indexamajig: Add profiling and last_task info for ZMQ fetch | Thomas White | |
| 2022-07-06 | GUI: Invoke programs without path | Thomas White | |
| Including the path wasn't working very well. One of the problems is that it prevents the use of a wrapper script for the programs, which is needed for certain environments. This commit just removes the path prefixes altogether. | |||
| 2022-07-06 | Merge branch 'container-test' | Thomas White | |
| 2022-07-06 | CI: Build "latest" container only on master branch | Thomas White | |
| 2022-06-23 | indexamajig: Add --asapo-wait-for-stream | Thomas White | |
| 2022-06-22 | indexamajig: Wrap ZMQ parameters into separate structure | Thomas White | |
| 2022-06-22 | indexamajig: Wrap ASAP::O parameters up inside separate structure | Thomas White | |
| 2022-06-20 | tests/file-wait: Use older type of function definition | Thomas White | |
| The definition with the "function" keyword doesn't work on plain 'sh'. | |||
| 2022-06-20 | Simplify Dockerfile | Thomas White | |
| 2022-06-20 | Add Dockerfile and CI config for building image | Thomas White | |
| 2022-06-17 | ASAP::O: Simplify by removing stream switching logic | Thomas White | |
| 2022-06-16 | ASAP::O: Exit quicker (and with explanation) if setup fails | Thomas White | |
| 2022-06-09 | pair_peaks: Use fabs instead of abs for floating point values | Thomas White | |
| 2022-06-09 | Remove some unused variables | Thomas White | |
| 2022-06-08 | Meson: Update wrap for libccp4c | Thomas White | |
| 2022-06-02 | Meson: Don't look for cJSON unless Seedee is found | Thomas White | |
| 2022-06-02 | indexamajig: Make all three input options mutually exclusive | Thomas White | |
| 2022-06-02 | Update documentation to include ASAP::O and Seedee | Thomas White | |
| 2022-06-02 | tests/stream_roundtrip: Clean up stream afterwards | Thomas White | |
| 2022-06-02 | Merge branch 'asapo-consumer' | Thomas White | |
| 2022-06-02 | Meson: Change HAVE_ASAPO conf_data from '1' to 'true' | Thomas White | |
| See 13a36408f3b867938cb029a9d11d952113d9bf64 | |||
| 2022-06-02 | ASAP::O: Add last_task for ASAPO fetch | Thomas White | |
| 2022-06-02 | Add worker ID to profiling data | Thomas White | |
| 2022-06-02 | Add profiling for bad region generation | Thomas White | |
| 2022-06-02 | Use isfinite() instead of isnan() || isinf() | Thomas White | |
| These FP calls seem to be slower than expected. Using only one doubles the speed. | |||
| 2022-06-02 | Fix horrific Seedee memory leak | Thomas White | |
| 2022-06-02 | indexamajig: Add --asapo-stream | Thomas White | |
| 2022-06-02 | ASAP::O: Add profiling | Thomas White | |
| 2022-06-02 | Seedee deserialization | Thomas White | |
| 2022-06-02 | indexamajig: Track metadata (e.g. for ASAP::O) | Thomas White | |
| 2022-06-02 | ASAP::O: Add profiling bits | Thomas White | |
| 2022-06-02 | ASAP::O: Give up if there are no streams at all | Thomas White | |
| 2022-06-02 | Add instance ID and pipeline step | Thomas White | |
| 2022-06-02 | Generate placeholder filename/event earlier | Thomas White | |
| Previously, a placeholder was put in the queue ("ZMQdata //" or "ASAPOdata //"), and replaced by image_read_data_block. Instead, the "final" placeholder can be put in the queue already. Note that ASAP::O, at least, will replace this placeholder with a filename delivered by the data transport. | |||
| 2022-06-02 | ASAP::O: Increase timeout to 3 seconds | Thomas White | |
| 2022-06-02 | ASAP::O: Set path to "auto" | Thomas White | |
| 2022-06-02 | ASAP::O: Comment out repetitive status message | Thomas White | |
| 2022-06-02 | ASAP::O: Fix call to get filename | Thomas White | |
| 2022-06-02 | ASAP::O: Pass filename through | Thomas White | |
| 2022-06-02 | ASAP::O: Fix comments | Thomas White | |
| 2022-06-02 | indexamajig(1): Mention ASAP::O | Thomas White | |
| 2022-06-02 | ASAP::O: Fix stream switching | Thomas White | |
| 2022-06-02 | Refuse to overwrite an existing stream | Thomas White | |
| With online processing, we might end up with a very long stream. It should not be so easily deleted if indexamajig is restarted! | |||
| 2022-06-02 | ASAP::O: Fix memory leaks | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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