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2015-07-13Slow down the status updatesThomas White
2015-07-13Clean up semaphore on interruptThomas White
Necessary since we encourage users to interrupt indexamajig with Ctrl+C Also, generally improve the signal handling.
2015-07-13Use named semaphores instead of unnamedThomas White
2015-07-13indexamajig: Avoid forking while multithreadedThomas White
Conflicts: src/im-sandbox.c
2015-07-13Re-work im-sandboxThomas White
... it certainly needed it.
2015-07-13Fix some warningsThomas White
2015-07-10Temporary fix of infinite loop bug in asdf_reduce_cell()Alexandra Tolstikova
2015-07-09Tidy up error handling when given dodgy data locationsThomas White
2015-07-09Remove -Werror from OpenCL compilation flagsThomas White
2015-07-09indexamajig: Fix noise filter backup/restoreThomas White
2015-07-09hdfsee: Use "dp" for numbers viewThomas White
2015-07-09Make noise filters use "dp" instead of "data"Thomas White
2015-07-08Fix PR gradientsThomas White
D'oh! This must have crept in during a big tidyup before a commit
2015-07-08Move {x,y}_gradient to geometry.hThomas White
2015-07-08Remove unnecessary calculations from prediction refinementThomas White
2015-07-08pattern_sim: Add check for HDF5 referencesThomas White
This trips *everyone* up.
2015-07-08pattern_sim: Fix displayed pulse energyThomas White
2015-07-07partialator: Increase maximum B factor to 1000 A^2, and normalise B factorsThomas White
2015-07-07Update AUTHORS, ChangeLog and commentsThomas White
2015-07-07Update docsThomas White
2015-07-07process_hkl: add --even-only and --odd-only options to make half-datasetsKeitaro Yamashita
2015-07-07Add mask_file to geometry file, to allow bad pixel mask to be stored separatelyThomas White
2015-07-07Make the two geometry examples more similarThomas White
2015-07-06FormattingThomas White
2015-07-03partialator: Add --start-after/--stop-after options and write symmetry in ↵Keitaro Yamashita
hkl files.
2015-07-03Delete trailing whitespaceThomas White
2015-06-30Fix mistakes in documentationThomas White
2015-06-26Plug some more leaksThomas White
2015-06-26Fix prediction refinement memory leaksThomas White
2015-06-26Free crystal notesThomas White
2015-06-26Work round unaligned read with DirAxThomas White
Ok, just to keep Valgrind quiet.
2015-06-25scripts/plot-predict-refine: Fix pointless lineThomas White
2015-06-25Move predict-refine to libcrystfelThomas White
2015-06-25Set MOSFLM default flags to include cell parameters, and add some checksThomas White
2015-06-25Try "mosflm" first, then try "ipmosflm" if it doesn't workThomas White
This allows a smooth transition from CCP4 to standalone version of mosflm, and hence an easy upgrade to newer versions.
2015-06-25Tidy up some small leaks and memory bugsThomas White
2015-06-24WhitespaceThomas White
2015-06-23s/MAP_ANONYMOUS/MAP_ANON/Thomas White
Needed for OSX compatability
2015-06-19Update ChangeLogThomas White
2015-06-19Tidy up new MOSFLM codeThomas White
2015-06-19Send prior cell information to MOSFLM.Takanori Nakane
Prior-cell algorithm will be available in the next public relase of MOSFLM. (Old version of MOSFLM simply ignores prior-cell keywords so that this change doesn't do any harm)
2015-06-19Remove old code/formattingThomas White
2015-06-19Update docsThomas White
2015-06-19Compile asdf only if FFTW is availableThomas White
2015-06-19Remove ReAx and GrainSpotterThomas White
Neither of these ever really worked, and better algorithms exist now.
2015-06-18Small tidying up for asdfThomas White
2015-06-18Merge branch 'tolstikova/dirax'Thomas White
Conflicts: libcrystfel/src/index.h
2015-06-18Fix bug in cell refinementAlexandra Tolstikova
2015-06-18Replace semaphore with a mutexThomas White
A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself...
2015-06-17Check c->n after cell reductionAlexandra Tolstikova