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2013-05-31Fix a silly mistakeThomas White
2013-05-30Include initial centering offset in streamThomas White
2013-05-30Update peak coordinates after integrationThomas White
2013-05-30Fix previous commitThomas White
2013-05-30Remove unused parameterThomas White
2013-05-30Fix uninitialised saturation flagThomas White
2013-05-30Update docsThomas White
2013-05-30Fussiness (extreme)Thomas White
2013-05-30indexamajig: Get rid of --use-saturated, because it's now the defaultThomas White
2013-05-30Update docsThomas White
2013-05-30process_hkl: Add --min-snrThomas White
2013-05-30Fix dummy ReAx prototype (again)Thomas White
2013-05-30indexamajig: Get rid of --min-integration-snrThomas White
This functionality belongs in process_hkl.
2013-05-30Validate peaks using peak search SNR, not integration SNRThomas White
2013-05-30Tidy upThomas White
2013-05-28Add "blackhole" regions to peak integrationThomas White
Blackhole regions should be completely ignored, i.e. don't even call boxi() on such a pixel. This is distinct from pixels which can be used (e.g. for initial centroiding), but which happen not to be selected for background or peak integration.
2013-05-28Add "-cen"Thomas White
2013-05-28Attempt to center the box a bit before integrationThomas White
2013-05-28Improvements to debug outputThomas White
2013-05-28Colours in peak box display (via ncurses)Thomas White
2013-05-28Honour "-sat"Thomas White
2013-05-28--use-saturated should be the defaultThomas White
2013-05-28Rename "refine" to "prof2d"Thomas White
2013-05-28Move "rings" integration to new peak box frameworkThomas White
2013-05-27Profile fitting stuffThomas White
2013-05-27hdfsee: Fix segfault on startupThomas White
2013-05-27Debugging outputThomas White
2013-05-27Code organisationThomas White
2013-05-27Do the actual profile fittingThomas White
2013-05-27Store all peak boxesThomas White
2013-05-27Assign rigid group for panels which don't have oneThomas White
2013-05-27Calculate the reference profilesThomas White
2013-05-27Background fittingThomas White
2013-05-27Integration stuffThomas White
2013-05-27Individual panel arraysThomas White
2013-05-27Initial integration stuffThomas White
2013-05-27Fix ReAx stack corruptionThomas White
2013-05-27hdfsee: Fix display of feature names (indices) when using geometryThomas White
2013-05-15Disable weighting (for now) and update ChangeLogThomas White
2013-05-15Move polarisation_correction() to geometry.cThomas White
2013-05-15process_hkl: Do polarisation correction before determining scale factorsThomas White
Also, do the polarisation correction correctly..
2013-05-15process_hkl: Use weighting according to sigmas, and use better variance formulaThomas White
2013-05-14Update ChangeLogThomas White
2013-05-14FussinessThomas White
2013-05-14Fixed clen for XDSCornelius Gati
Conflicts: libcrystfel/src/xds.c
2013-05-14Update ChangeLogThomas White
2013-05-14Update manual pagesThomas White
2013-05-10Fix declaration for dummy reax_index()Thomas White
2013-05-06Add num_reflections to streamThomas White
2013-05-06Add is_centric() to docsThomas White
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