CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2017-10-02	indexamajig(1): Add --temp-dir	Thomas White

2017-10-02	indexamajig: Add missing documentation for --check-peaks	Thomas White

2017-09-21	Group the options in indexamajig(1) according to processing stage	Thomas White

2017-09-21	Update man page for new indexing options	Thomas White

2017-07-24	Update docs	Thomas White

2017-07-20	indexamajig(1): Give default values for TakeTwo options	Thomas White

2017-07-07	Documentation for TakeTwo indexamajig options	Thomas White

2017-06-27	indexamajig: Add --no-non-hits-in-stream	Thomas White

2017-03-31	Offset peak locations from HDF5 or CXI files by 0.5,0.5	Thomas White
	CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
2017-03-13	Added information about max_num_peaks to documentation	Valerio Mariani

2017-03-10	Added peakfinder8 information to the indexamajig man page	Valerio Mariani

2016-03-31	Handle placeholders in --hdf5-peaks	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-01	indexamajig: Wall clock profiling	Thomas White

2016-02-12	Update manual	Thomas White

2016-01-08	Make indexing "retry" and "multi" optional	Thomas White

2015-11-18	Documentation fixes	Thomas White

2015-11-17	Update docs	Thomas White

2015-09-15	Implement Felix Indexer	Kenneth Beyerlein

2015-08-27	indexamajig: Update docs	Thomas White

2015-06-30	Fix mistakes in documentation	Thomas White

2015-06-19	Update docs	Thomas White

2015-04-20	indexamajig: Add --no-refine	Thomas White

2015-02-16	Update manual pages	Thomas White

2015-02-13	Update docs	Thomas White

2015-02-12	indexamajig: Add --fix-{profile-radius,bandwidth,divergence}	Thomas White

2015-02-05	Remove --beam from indexamajig(1)	Thomas White

2015-02-05	Tweak manual pages	Thomas White

2015-02-05	Documentation for new geometry file format and geoptimiser	Valerio Mariani

2014-09-19	Introduce CrystFEL unit cell files	Thomas White

2014-09-11	Update manual	Thomas White

2014-09-05	Update docs	Thomas White

2014-08-13	indexamajig: Add --highres	Thomas White

2014-06-20	indexamajig: Add --peak-radius	Thomas White

2014-05-30	Update docs	Thomas White

2014-05-20	process_hkl: Add --push-res	Thomas White

2014-04-09	Remove vestigial "closer-peak" option	Thomas White

2014-04-08	indexamajig: Add --push-res	Thomas White

2014-04-08	Update docs	Thomas White

2014-04-07	Update docs	Thomas White

2014-03-26	indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr	Thomas White

2013-11-23	indexamajig: Add --int-diag=implausible	Thomas White

2013-11-23	Add --int-diag=negative	Thomas White

2013-11-23	indexamajig: Add --int-diag	Thomas White

2013-07-05	Fix more lies	Thomas White

2013-07-05	Fix lies in indexamajig man page	Thomas White

2013-06-01	Update docs	Thomas White

2013-05-30	indexamajig: Get rid of --use-saturated, because it's now the default	Thomas White

2013-05-30	Update docs	Thomas White

2013-05-27	Initial integration stuff	Thomas White