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2019-07-05geoptimiser: Use geometry from stream, if presentThomas White
Simply omit the -g option to use geometry from stream.
2019-06-25partial_sim: Add --template-streamThomas White
2019-06-21partialator: Add --force-lambdaThomas White
2019-05-08Add missing =nThomas White
2019-05-08Add new xgandalf optionsYaroslav Gevorkov
2019-04-02Update crystfel_geometry(5)Thomas White
2019-03-15Add documentationThomas White
2019-03-11cell_tool: Add documentation for --transformThomas White
2019-03-11Consider fractional cell lengths during comparisonThomas White
This is WAY too slow. Need another algorithm.
2019-03-11Initial cell_tool (implementing find_ambi only)Thomas White
2019-03-06indexamajig: Rename --min-gradient to --min-squared-gradientThomas White
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient.
2018-12-18make_pixelmap: Use <input>.h5 as default output filenameThomas White
2018-12-18Update partialator manualThomas White
2018-12-18A few manual fixesThomas White
2018-12-18check_hkl: Add a note to manual pageThomas White
2018-12-06Add make_pixelmap to core CrystFELThomas White
2018-12-03indexamajig: Add --wait-for-fileThomas White
2018-10-08partialator: Add missing manual entry for --no-deltacchalfThomas White
2018-08-10Fix crystfel_geometry manual page againThomas White
2018-08-10Remove old untruths from crystfel_geometry manual pageThomas White
2018-07-26partialator: Add --min-resThomas White
2018-07-26partialator: Add missing documentation for --no-BscaleThomas White
2018-06-20Finish removing "selector"Thomas White
2018-06-18Add interface to XGANDALF indexerYaroslav Gevorkov
2018-05-30Use only one min-snr optionThomas White
2018-05-30Changed parameter window-radius -> local-bg-radiusYaroslav Gevorkov
2018-05-30Adapted doc to min-sig -> min-snr changeYaroslav Gevorkov
2018-05-24Update authorship and copyright datesThomas White
2018-05-24Tweak wording in manualThomas White
2018-05-24Add "peakfinder9"Yaroslav Gevorkov
2018-05-17Update copyright datesThomas White
2018-05-17Update manual pagesThomas White
2018-02-27Add --force-bandwidth and --force-radiusThomas White
2018-02-27Update manual pageThomas White
2018-02-27partialator: Add -w and --operator optionsThomas White
2018-02-27partialator: Tidy up old log files, and add --no-logsThomas White
2018-02-27indexamajig: Add --overpredictThomas White
2018-02-08Changed the naming of felix options and variables to make them more obvious.Kenneth R. Beyerlein
2017-12-12indexamajig: Add --serial-offsetThomas White
2017-10-12indexamajig: Simplify Felix optionsThomas White
2017-10-02indexamajig(1): Add --temp-dirThomas White
2017-10-02indexamajig: Add missing documentation for --check-peaksThomas White
2017-09-21Group the options in indexamajig(1) according to processing stageThomas White
2017-09-21Update man page for new indexing optionsThomas White
2017-09-15hdfsee(1): Document --rigid-groupsThomas White
2017-07-24Update docsThomas White
2017-07-20indexamajig(1): Give default values for TakeTwo optionsThomas White
2017-07-07Documentation for TakeTwo indexamajig optionsThomas White
2017-06-27indexamajig: Add --no-non-hits-in-streamThomas White
2017-03-31Offset peak locations from HDF5 or CXI files by 0.5,0.5Thomas White
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
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