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2021-03-29Add documentation for --harvest-fileThomas White
2021-03-25indexamajig: Add --camera-length-estimateThomas White
Unfortunately, PinkIndexer needs the real camera length for its centre refinement. Giving a fake value and scaling the resulting shift does not work - the indexing rate drops with even a small error. Ideally, this would work in the same way as --wavelength-estimate, by using a static value from the geometry file if it's given. However, this is rather complicated to implement because of the way all the units stuff is implemented. Therefore, this is left as an improvement for the future.
2021-03-11indexamajig(1): Fix formatting and spellingThomas White
2021-03-11indexamajig: Add --max-indexer-threadsThomas White
This is a more general replacement for --pinkIndexer-thread-count.
2021-03-11PinkIndexer: Remove wide bandwidth stuffThomas White
This will return later in a more centralised form, if we decide to work further on wide bandwidth.
2021-03-11PinkIndexer: Remove custom indexing checksThomas White
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it.
2021-03-11indexamajig: Add --wavelength-estimateThomas White
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy
2021-03-09Add the ability to use multiple bad pixel masks at onceThomas White
2021-01-22compare_hkl: Remove --intensity-shellsThomas White
No-one uses it, it doubles the complexity of the code, and the manual even warns not to use it.
2021-01-22Remove doc/stream-format.txtThomas White
The tiny amount of information in that file isn't relevant (or even correct..) any more.
2021-01-08Update documentation about max_adu, and add a warningThomas White
2020-12-18Improve documentation about file-based peak listsThomas White
2020-12-18Add peak_list_type in geometry fileThomas White
2020-12-16Add flag_{lessthan,morethan,equal} in geometry fileThomas White
This makes handling Pilatus/Eiger files, as well as many others, much easier.
2020-10-23partialator(1): Add missing partiality modelsThomas White
2020-07-29Add detector_shift_{x,y} to geometry fileThomas White
2020-07-29Rearrange geometry manual pageThomas White
2020-07-29Add wavelength and electron_voltage, plus units, to geometry fileThomas White
2020-07-29Remove hdfsee manual pageThomas White
2020-03-04fix documentation for pinkIndexerYaroslav Gevorkov
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-13Update crystfel(7) manual pageThomas White
2020-02-08pinIndexer documentation tuningYaroslav Gevorkov
2020-02-07refine documentation for --pinkIndexer-override-bandwidthYaroslav Gevorkov
2020-02-07fix pinkIndexer documentationYaroslav Gevorkov
2020-02-05Manual page updatesThomas White
2020-02-05Fix manual typoThomas White
2020-01-10Mass update of copyright datesThomas White
2019-11-18Fix documentationThomas White
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-10-24get_hkl: Clean up resolution cutoffs and add --lowresThomas White
2019-09-23Get rid of "rescut" integration flagThomas White
Its behaviour is 100% covered by the push-res parameter, which can be set to infinity for no cutoff.
2019-09-12indexamajig: Get rid of --fix-bandwidth / use bandwidth from geometry fileThomas White
2019-09-12Add pinkIndexer interfaceYaroslav Gevorkov
2019-09-05Allow the polarsation correction to be completely disabledThomas White
2019-09-02indexamajig(1): Fix capitalisationThomas White
2019-09-02process_hkl,partialator: Allow arbitrary direction and degree of polarisationThomas White
2019-08-29indexamajig: Remove --no-cell-combinationsThomas White
Also remove all the related API stuff. We now have a much better way of checking indexing results.
2019-08-27cell_tool: Clarify interpretation of tolerancesThomas White
2019-07-22ambigator: Use three pre-defined resolution bins if no resolution limits are ↵Thomas White
given
2019-07-17Merge branch 'tom/zmq'Thomas White
2019-07-16Add matrix notation docThomas White
2019-07-05geoptimiser: Use geometry from stream, if presentThomas White
Simply omit the -g option to use geometry from stream.
2019-06-25partial_sim: Add --template-streamThomas White
2019-06-21partialator: Add --force-lambdaThomas White
2019-05-08Add missing =nThomas White
2019-05-08Add new xgandalf optionsYaroslav Gevorkov
2019-05-07Remove old documentation stuffThomas White
2019-04-02Update crystfel_geometry(5)Thomas White
2019-03-15Add documentationThomas White
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