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2017-07-05Update docsThomas White
2017-07-05Rearrange quaternion declarations so that gtk-doc can copeThomas White
The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together.
2017-06-27indexamajig: Add --no-non-hits-in-streamThomas White
2017-03-31Offset peak locations from HDF5 or CXI files by 0.5,0.5Thomas White
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
2017-03-24Merge branch 'valerio/peakfinder8'Thomas White
2017-03-13Added information about max_num_peaks to documentationValerio Mariani
2017-03-10Added peakfinder8 information to the indexamajig man pageValerio Mariani
2017-03-08compare_hkl: Fix combination of sigma(I) values for d1sig and d2sigThomas White
2017-03-08compare_hkl: Fix documentationThomas White
2017-03-08Add example Eiger geometry fileThomas White
2017-02-17Update docs (add funding acknowledgements)Thomas White
2016-11-07render_hkl: Show max value, and improve documentation for --scale-topThomas White
2016-08-11Take rail direction as a vector rather than individual x,y,z valuesThomas White
Just to make it more consistent with fs/ss directions
2016-08-10Allow peak table location to be given in geometry fileThomas White
2016-08-09Update manualThomas White
2016-04-12Merge branch 'tom/testing'Thomas White
2016-04-01Add adu_per_photon (distinct from adu_per_eV)Thomas White
2016-03-31Handle placeholders in --hdf5-peaksThomas White
2016-03-21This is CrystFEL 0.6.20.6.2Thomas White
2016-03-18Update docsThomas White
2016-03-18Update docsThomas White
2016-03-01indexamajig: Wall clock profilingThomas White
2016-02-12Update manualThomas White
2016-02-05Update docsThomas White
2016-01-08Make indexing "retry" and "multi" optionalThomas White
2015-12-17hdfsee: Update docsThomas White
2015-12-15Update paper reference in geoptimiser man pageThomas White
2015-11-19partialator: Set default push-res to infinityThomas White
Not needed now that the scaling is more stable
2015-11-18Documentation fixesThomas White
2015-11-17Update docsThomas White
2015-11-13Fix bug in process_hkl documentationThomas White
2015-10-27Update docs for pattern_simThomas White
2015-09-16Update docsThomas White
2015-09-15Implement Felix IndexerKenneth Beyerlein
2015-09-03Tweak the docs againThomas White
2015-08-31partialator: Add --max-rel-BThomas White
2015-08-31Update docsThomas White
2015-08-31Update docsThomas White
2015-08-27indexamajig: Update docsThomas White
2015-08-18Major refactoring of geoptimiserValerio Mariani
2015-08-03This is CrystFEL 0.6.10.6.1Thomas White
2015-08-01partialator: Add --no-free (for testing only)Thomas White
2015-07-23geoptimiser: Better warning messages, auto determination of spot separationValerio Mariani
2015-07-21Update API docsThomas White
2015-07-17partialator: Add --no-prThomas White
2015-07-07Update docsThomas White
2015-07-07Add mask_file to geometry file, to allow bad pixel mask to be stored separatelyThomas White
2015-07-07Make the two geometry examples more similarThomas White
2015-06-30Fix mistakes in documentationThomas White
2015-06-19Update docsThomas White