CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2017-03-31	Offset peak locations from HDF5 or CXI files by 0.5,0.5	Thomas White
	CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
2017-03-24	Merge branch 'valerio/peakfinder8'	Thomas White

2017-03-13	Added information about max_num_peaks to documentation	Valerio Mariani

2017-03-10	Added peakfinder8 information to the indexamajig man page	Valerio Mariani

2017-03-08	compare_hkl: Fix combination of sigma(I) values for d1sig and d2sig	Thomas White

2017-03-08	compare_hkl: Fix documentation	Thomas White

2017-03-08	Add example Eiger geometry file	Thomas White

2017-02-17	Update docs (add funding acknowledgements)	Thomas White

2016-11-07	render_hkl: Show max value, and improve documentation for --scale-top	Thomas White

2016-08-11	Take rail direction as a vector rather than individual x,y,z values	Thomas White
	Just to make it more consistent with fs/ss directions
2016-08-10	Allow peak table location to be given in geometry file	Thomas White

2016-08-09	Update manual	Thomas White

2016-04-12	Merge branch 'tom/testing'	Thomas White

2016-04-01	Add adu_per_photon (distinct from adu_per_eV)	Thomas White

2016-03-31	Handle placeholders in --hdf5-peaks	Thomas White

2016-03-21	This is CrystFEL 0.6.20.6.2	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-18	Update docs	Thomas White

2016-03-01	indexamajig: Wall clock profiling	Thomas White

2016-02-12	Update manual	Thomas White

2016-02-05	Update docs	Thomas White

2016-01-08	Make indexing "retry" and "multi" optional	Thomas White

2015-12-17	hdfsee: Update docs	Thomas White

2015-12-15	Update paper reference in geoptimiser man page	Thomas White

2015-11-19	partialator: Set default push-res to infinity	Thomas White
	Not needed now that the scaling is more stable
2015-11-18	Documentation fixes	Thomas White

2015-11-17	Update docs	Thomas White

2015-11-13	Fix bug in process_hkl documentation	Thomas White

2015-10-27	Update docs for pattern_sim	Thomas White

2015-09-16	Update docs	Thomas White

2015-09-15	Implement Felix Indexer	Kenneth Beyerlein

2015-09-03	Tweak the docs again	Thomas White

2015-08-31	partialator: Add --max-rel-B	Thomas White

2015-08-31	Update docs	Thomas White

2015-08-31	Update docs	Thomas White

2015-08-27	indexamajig: Update docs	Thomas White

2015-08-18	Major refactoring of geoptimiser	Valerio Mariani

2015-08-03	This is CrystFEL 0.6.10.6.1	Thomas White

2015-08-01	partialator: Add --no-free (for testing only)	Thomas White

2015-07-23	geoptimiser: Better warning messages, auto determination of spot separation	Valerio Mariani

2015-07-21	Update API docs	Thomas White

2015-07-17	partialator: Add --no-pr	Thomas White

2015-07-07	Update docs	Thomas White

2015-07-07	Add mask_file to geometry file, to allow bad pixel mask to be stored separately	Thomas White

2015-07-07	Make the two geometry examples more similar	Thomas White

2015-06-30	Fix mistakes in documentation	Thomas White

2015-06-19	Update docs	Thomas White

2015-05-08	Sanity checks are performed on the detector layout if a CSPAD-like detector ↵	Valerio mariani
	is found
2015-04-20	indexamajig: Add --no-refine	Thomas White

2015-04-20	partial_sim: Update --help and manual	Thomas White