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2023-07-11partialator: Add --unmerged-outputThomas White
2023-06-01indexamajig: Add --asapo-output-stream (hits only)Thomas White
2023-05-02indexamajig: Add --cpu-pinThomas White
Similar code was stripped out 3.5 years ago by 4f4e5d05269eee6b192c271f2f9730a1ad3a4fbd. However, it seems there are still systems where it improves performance a lot.
2023-05-02Remove pattern_sim and partial_simThomas White
Use of these programs has been following this pattern for several years: 1. Neglect 2. Once yearly attempt by someone to use either tool 3. Discovery that it's totally broken 4. Bug report and fast bug fix 5. Go to 1. For more discussion, see the issue referenced below. Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/81
2023-05-02Remove CMake build filesThomas White
It's already far behind parity with Meson, and getting worse.
2023-04-20compare_hkl: Recognise --fom=cc*, cc1/2 and cchalfThomas White
2023-04-20indexamajig(1): Mention "nproc"Thomas White
2023-03-01Remove vestigial geoptimiser stuffThomas White
2023-02-20Fix small manual problemsThomas White
2023-02-20speed.rst: Fix a typoThomas White
2023-02-17speed.rst: Fix some line breaksThomas White
2023-02-17Update speed.rstThomas White
2023-02-17indexamajig(1): Update text and fix untruthsThomas White
2023-02-15Tutorial: update screenshot with new iconsThomas White
Corrected version of commit.
2023-02-15Revert "Tutorial: update screenshot with new icons"Thomas White
This reverts commit 044560941c0aa28e1e809f148ce553e985b4e868. Accidentally committed stuff that should not be there yet.
2023-02-15pointgroup.rst: Fix a couple of typosThomas White
2023-02-15Tutorial: update text about detector-shift and peakogram-streamThomas White
These are now installed (no more copy/chmod needed), and accessible from the GUI.
2023-02-15Tutorial: update screenshot with new iconsThomas White
2023-02-09pattern_sim: Fix up behaviour after DataTemplateThomas White
Analogous fixes to those done for partial_sim in 0effb5f83daf0317aa97a1cd10e7708551a25201.
2023-02-09partial_sim: Fix up behaviour after DataTemplateThomas White
It's been broken for a long time. Now, at least it does what the documentation says it does. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/78
2023-02-09Tutorial: be clear about working directoryThomas White
The tutorial won't work, if followed exactly, unless the mask is in the working directory. Saving it next to the geometry file, but in a different folder, won't work. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/77
2023-02-08crystfel_geometry(5): Add missing documentation for 'bandwidth'Thomas White
2022-12-07crystfel_geometry(5): Add a missing equals signThomas White
2022-11-29Add doc/articles/pointgroup.rstThomas White
2022-11-29Improve the unit cell exampleThomas White
2022-11-08indexamajig: Add --cell-parameters-onlyThomas White
2022-10-05Merge branch 'pf8_faster'Thomas White
2022-09-22speed.rst: Add a note about static detector geometryThomas White
2022-09-21speed.rst: Mention --asdf-fastThomas White
2022-09-21indexamajig(1): Add --asdf-fastThomas White
2022-09-08speed.rst: Add more adviceThomas White
2022-06-23indexamajig: Add --asapo-wait-for-streamThomas White
2022-06-17ASAP::O: Simplify by removing stream switching logicThomas White
2022-06-02Update documentation to include ASAP::O and SeedeeThomas White
2022-06-02indexamajig: Add --asapo-streamThomas White
2022-06-02Seedee deserializationThomas White
2022-06-02indexamajig(1): Mention ASAP::OThomas White
2022-06-02Update indexamajig(1) to say that things also refer to --peaks=msgpackThomas White
2022-04-07Update cell_explorer screenshotThomas White
Same deal as 6ead0af32.
2022-04-07Tutorial: Fix a tiny typoThomas White
2022-04-07Update tutorial screenshotThomas White
This has a cleaner background, and the window icon has been fixed (see ad8494c441231).
2022-03-18GUI: Use sbatch/scancel/scontrol instead of Slurm APIThomas White
This commit strips out all references to the Slurm API, instead making subprocess calls to sbatch and scontrol. Attempting to use the Slurm API seems to have been a mis-step. First, it seems that nowhere has the Slurm headers pre-installed. Literally none of the facilities where there are known deployments of CrystFEL have them. And in a significant fraction of cases, getting them installed is difficult, slow or impossible. In addition, the API doesn't seem to work in all cases, so we already shell out to 'scancel' to abort jobs - see d76fc3495. There are some tricky implications for submitting Slurm jobs from a container via the API. The Slurm REST API offers a solution, but is very new and not widely available. Calls to the Slurm executables are much easier to 'tunnel' out of a container. This isn't a great solution. It's a net increase of only about 40 lines of source code, but it incurs some unpleasant string handling and will probably be less reliable overall. It completely relies on Slurm's not being internationalised. If Slurm's messages start getting translated, we will be in trouble.
2022-03-01Add new tutorialThomas White
2021-11-25partialator: Handle spaces in custom split fileThomas White
The csplit format is ambiguous when the filenames contain spaces. To make things a bit clearer, the file now requires the fields to be separated by exactly one space rather than any number of tabs/spaces. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/55
2021-10-28Add 'mask_panel_edges' to geometry fileThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/27
2021-10-26Remove detector rail direction altogetherThomas White
This got missed out by accident in the conversion to DataTemplate, but absolutely no-one noticed. In the meantime, my views on how the geometry files should work have changed somewhat. I don't want to maintain the extra complexity here when it isn't even clear that it will eliminate the need to re-refine geometry for each camera length. This commit just takes the rail direction stuff out of the documentation and the geometry file parser. Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/50
2021-10-20Add "plain" MTZ file layout, distinct from "Bijvoet" layoutThomas White
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/52
2021-09-17Update online.rst to mention HDF5Thomas White
2021-09-17indexamajig: Add --data-formatThomas White
2021-09-06electrons.rst: Add missing equals signsThomas White
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