| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-10-18 | Add probe functions to indexing methods | Thomas White | |
| 2017-09-22 | Don't send detector and tolerance to indexing methods | Thomas White | |
| The detector isn't used for anything, and the tolerance is none of their business. | |||
| 2017-09-22 | Remove "latt" from asdf | Thomas White | |
| For consistency with other algorithms, let's standardise on an interpretation where just using the centering information in combination with the cell parameters, which is always necessary, doesn't qualify as "cell-latt", only "cell-nolatt". "Using lattice type as prior information" implies that asdf would behave differently with cell-nolatt, if it were allowed, than with cell-latt. It wouldn't. It just needs the centering to calculate the cell volume correctly. Note that TakeTwo, by contrast, would behave differently in this hypothetical case, because it uses the lattice type to exclude certain solutions by symmetry. Mosflm allows all four combinations of no/cell and no/latt, and does indeed behave differently between them. | |||
| 2017-09-22 | asdf uses prior information for its volume constraint, so add "cell" to the ↵ | Thomas White | |
| method | |||
| 2017-09-16 | Fix return of unit cells from asdf and dirax | Thomas White | |
| 2017-09-15 | Simplify indexing options | Thomas White | |
| mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions. | |||
| 2017-07-06 | Indexing engine private pointers should be void * | Thomas White | |
| 2017-03-13 | Ask for C99 in configure.ac, remove weird C99 declarations | Thomas White | |
| 2017-02-01 | asdf.c: Divide volume constraints by number of lattice points per unit cell. ↵ | Alexandra Tolstikova | |
| Add F centering | |||
| 2017-02-01 | asdf.c: Divide volume constraints by number of lattice points per unit cell ↵ | Alexandra Tolstikova | |
| since asdf always finds primitive cell | |||
| 2017-02-01 | Fix malloc fail due to integer overflow in N_triplets | Alexandra Tolstikova | |
| 2017-02-01 | Change volume_min, volume_max and d_max when indexing=asdf-comb | Alexandra Tolstikova | |
| 2017-02-01 | Change d_max according to the provided cell | Alexandra Tolstikova | |
| 2016-02-29 | asdf: Check array bounds before using | Thomas White | |
| 2016-02-29 | Formatting | Thomas White | |
| 2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
| Adds yet another indexing option... | |||
| 2016-01-27 | asdf: Don't assume that the number of peaks == image_feature_count() | Thomas White | |
| Yes, really. Sorry about the crappy API. | |||
| 2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
| 2015-08-14 | Fussiness | Thomas White | |
| 2015-08-14 | Change generation of triplets so that it doesn't segfault on patterns with ↵ | Alexandra Tolstikova | |
| big number of reflections | |||
| 2015-08-14 | Fix includes | Thomas White | |
| 2015-07-10 | Temporary fix of infinite loop bug in asdf_reduce_cell() | Alexandra Tolstikova | |
| 2015-07-03 | Delete trailing whitespace | Thomas White | |
| 2015-06-19 | Compile asdf only if FFTW is available | Thomas White | |
| 2015-06-18 | Small tidying up for asdf | Thomas White | |
| 2015-06-18 | Fix bug in cell refinement | Alexandra Tolstikova | |
| 2015-06-17 | Check c->n after cell reduction | Alexandra Tolstikova | |
| 2015-06-17 | Fix fft in[N] array subscript calculation | Alexandra Tolstikova | |
| 2015-06-16 | Check malloc return values | Alexandra Tolstikova | |
| 2015-04-22 | Free gsl_vector normal in index_refls() | Alexandra Tolstikova | |
| 2015-04-20 | Create fftw_plan and in and out arrays for fft in asdf_prepare(), which also ↵ | Alexandra Tolstikova | |
| partially solves memory leak problem | |||
| 2015-03-25 | Fix malloc and memcpy of asdf_cell.indices (int -> double) | Alexandra Tolstikova | |
| 2015-02-11 | Get cell volume range from tolerances | Alexandra Tolstikova | |
| 2015-02-11 | Move cell_get_volume from asdf.c to cell_utils.c | Alexandra Tolstikova | |
| 2015-02-11 | Move creation of a cell from tvectors into a separate function | Alexandra Tolstikova | |
| 2015-02-11 | Use one fftw_plan for all fft calculations | Alexandra Tolstikova | |
| 2015-02-11 | asdf.c: codestyle fixed | Alexandra Tolstikova | |
| 2015-02-11 | 'asdf' indexing method added | Alexandra Tolstikova | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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