CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2019-05-07	Update all source code comments to Doxygen format	Thomas White

2018-06-28	Remove worker process numbers from temporary filenames	Thomas White
	Since we've had the separate worker folders for a long time, it's not needed any more. Removing them will make the temporary folders easier to clean up.
2018-06-14	Add CMake check to find forkpty()	Thomas White

2018-01-19	Clean up indexing method probes	Thomas White

2017-10-23	Check return values from fread/fgets	Thomas White

2017-10-18	Check that dirax,felix,mosflm or xds are available at the start	Thomas White
	Avoids a confusing error message later.
2017-10-18	Add probe functions to indexing methods	Thomas White

2017-09-22	Don't send detector and tolerance to indexing methods	Thomas White
	The detector isn't used for anything, and the tolerance is none of their business.
2017-09-22	If no cell params or lattice type, set nocell/nolatt at top level	Thomas White
	Another thing that the indexing engines don't need to be repsonsible for.
2017-09-16	Fix return of unit cells from asdf and dirax	Thomas White

2017-09-15	Simplify indexing options	Thomas White
	mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions.
2017-08-31	Set first argument when running external indexing programs	Thomas White
	This makes sure they have names in process displays.
2017-07-06	Indexing engine private pointers should be void *	Thomas White

2016-07-28	Check return values when writing to Mosflm or DirAx	Thomas White

2016-01-30	indexamajig: Restore --no-refine	Thomas White
	Adds yet another indexing option...
2016-01-08	Make indexing "retry" and "multi" optional	Thomas White

2015-07-13	Slow down the status updates	Thomas White

2015-06-26	Work round unaligned read with DirAx	Thomas White
	Ok, just to keep Valgrind quiet.
2014-10-23	Fix a load of memory leaks	Thomas White

2014-09-22	Beam file removal, part I	Thomas White

2014-09-19	Remove cell_set_cartesian_{a,b,c}() from API	Thomas White

2014-09-19	Introduce CrystFEL unit cell files	Thomas White

2014-08-19	Use Gnulib forkpty()	Thomas White

2014-08-18	gettimeofday() fixes	Thomas White

2014-05-08	Strip out the "prepare_filename" rubbish	Thomas White

2013-06-01	Fix multiple small memory leaks	Thomas White

2013-05-14	Fussiness	Thomas White

2013-02-19	Add -cell and -nocell to indexing methods	Thomas White

2013-02-12	Improve handling of indexing methods	Thomas White

2013-02-09	Add cleanup functions for DirAx and MOSFLM	Thomas White

2013-02-09	Complain if a unit cell is needed and not provided	Thomas White

2013-02-08	Small tweaks	Thomas White

2013-02-06	Stuff	Thomas White

2013-02-05	WIP on bringing programs up to date	Thomas White

2013-02-04	Indexing stuff	Thomas White

2012-12-03	Use a less scary message for EINTR	Thomas White
	This is almost completely benign, and happens when profiling.
2012-11-21	Show error information if forkpty() fails	Thomas White

2012-05-30	Formatting	Thomas White

2012-03-12	Update copyright notices to show actual contribution years	Thomas White

2012-03-09	Update licence notices in line with recommendations from TT	Thomas White

2012-02-22	GPLv3 boilerplate comments	Thomas White

2012-02-22	Increase DirAx and MOSFLM timeouts to 30 sec	Thomas White

2012-02-22	Move indexing and rendering to libcrystfel	Thomas White