CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2016-01-29	Perform prediction refinement straight after indexing	Thomas White
	This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working.
2015-12-18	"Retry" mechanism for indexing	Thomas White
	This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found.
2015-12-05	Add option for per-pixel saturation values	Thomas White

2015-10-05	Final removal of image->data	Thomas White

2015-01-27	Keep hold of HDF5 fields which came from the stream	Valerio Mariani

2015-01-27	Add image_reflection_closest()	Valerio Mariani

2014-10-23	Add serial numbers to chunks	Thomas White

2014-09-24	Remove bandwidth, divergence and profile radius from struct beam_params	Thomas White

2014-09-24	Remove beam radius and nphotons from struct beam_params	Thomas White

2014-09-22	Beam file removal, part I	Thomas White

2014-09-05	Multi-event mode	Valerio Mariani

2014-09-05	Updated author lists	Valerio Mariani

2014-09-05	Refactoring of peaks and reflections I/O	Valerio Mariani

2014-09-05	Update docs	Thomas White

2014-07-24	Fixes closest feature detection bug	Valerio Mariani

2014-06-13	Add extern "C" for C++ compatibility	Chuck

2014-05-21	Tidy up headers	Thomas White

2014-01-28	Add two colour spectrum	Chun Hong Yoon

2014-01-20	pattern_sim: Overhaul and add SASE spectrum simulation	Thomas White

2013-05-27	Individual panel arrays	Thomas White

2013-02-18	Read GrainSpotter's output properly	Thomas White

2013-02-12	Improve handling of indexing methods	Thomas White

2013-02-08	Count saturated peaks and record in the file	Thomas White

2013-02-08	Small tweaks	Thomas White

2013-02-08	Update docs, comments etc	Thomas White

2013-02-04	Indexing stuff	Thomas White

2013-01-30	Stream changes	Thomas White

2013-01-28	First bit of Crystal	Thomas White

2012-10-21	indexamajig: Record number of saturated reflections in stream	Thomas White

2012-03-09	Update licence notices in line with recommendations from TT	Thomas White

2012-02-24	Remove I0 stuff	Thomas White
	Nothing used it, and it can't really be useful for anything. Use 'osf' instead.
2012-02-22	GPLv3 boilerplate comments	Thomas White

2012-02-22	Hooks for estimation of maximum resolution for each image	Thomas White

2012-02-22	Introduce "libcrystfel"	Thomas White