CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2016-01-15	Set indexing -nomulti as the default, and add a warning	Thomas White

2016-01-13	Fix logic for -retry and -multi	Thomas White

2016-01-08	Make indexing "retry" and "multi" optional	Thomas White

2015-12-18	"Retry" mechanism for indexing	Thomas White
	This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found.
2015-09-15	Formatting / fussiness	Thomas White

2015-09-15	Update boilerplate comments	Thomas White

2015-09-15	Remove unnecessary breaks	Thomas White

2015-09-15	Implement Felix Indexer	Kenneth Beyerlein

2015-06-25	Set MOSFLM default flags to include cell parameters, and add some checks	Thomas White

2015-06-25	Tidy up some small leaks and memory bugs	Thomas White

2015-06-19	Remove ReAx and GrainSpotter	Thomas White
	Neither of these ever really worked, and better algorithms exist now.
2015-06-18	Merge branch 'tolstikova/dirax'	Thomas White
	Conflicts: libcrystfel/src/index.h
2015-04-20	Improve error message	Thomas White

2015-04-20	Add INDEXING_DEBUG	Thomas White

2015-02-11	'asdf' indexing method added	Alexandra Tolstikova

2014-11-25	Add warning if the number of peaks is huge	Thomas White

2014-09-22	Beam file removal, part I	Thomas White

2014-09-05	Multi-event mode	Valerio Mariani

2014-05-08	Strip out the "prepare_filename" rubbish	Thomas White

2014-02-23	build_indexed_list(): Recognise "simulation"	Thomas White
	Because we also need it to work when reading a stream.
2013-09-13	Add INDEXING_SIMULATION for streams made by partial_sim	Thomas White

2013-05-27	Fix ReAx stack corruption	Thomas White

2013-03-01	Update docs (and shake out buglets revealed along the way)	Thomas White

2013-02-19	Add -cell and -nocell to indexing methods	Thomas White

2013-02-18	Update XDS for new indexing subsystem	Thomas White

2013-02-18	Merge branch 'cornelius/xds' into tom/multicrystal	Thomas White
	Conflicts: libcrystfel/Makefile.am libcrystfel/src/index.c libcrystfel/src/index.h
2013-02-18	Read GrainSpotter's output properly	Thomas White

2013-02-18	Merge branch 'tom/grainspotter' into tom/multicrystal	Thomas White
	Conflicts: libcrystfel/Makefile.am libcrystfel/src/index.c libcrystfel/src/index.h
2013-02-15	Fussiness	Thomas White

2013-02-12	Improve handling of indexing methods	Thomas White

2013-02-09	Add cleanup functions for DirAx and MOSFLM	Thomas White

2013-02-09	Complain if a unit cell is needed and not provided	Thomas White

2013-02-09	Clarify lattice type information	Thomas White

2013-02-08	Allow --indexing=none	Thomas White

2013-02-05	WIP on updating partialator	Thomas White

2013-02-05	Fixes for indexing pipeline	Thomas White

2013-02-05	Indexing pipeline - "done"!	Thomas White

2013-02-04	Indexing stuff	Thomas White

2013-02-01	WIP on new indexing pipeline logic	Thomas White

2013-01-28	Tried to fix errors in xds.c	Cornelius Gati

2013-01-28	Changed index.c/.h	Cornelius Gati

2013-01-08	Skeleton indexing method for GrainSpotter	Thomas White

2012-10-02	Move unit cell utility stuff to separate module	Thomas White

2012-05-31	Merge branch 'master' into tom/speed	Thomas White
	Conflicts: .gitignore
2012-05-30	Formatting	Thomas White

2012-05-25	WIP on tidy-up	Thomas White

2012-05-22	Remove timing stuff (and trailing whitespace)	Thomas White

2012-05-09	Multiprocess indexamajig	Chuck

2012-03-12	Update copyright notices to show actual contribution years	Thomas White

2012-03-09	Update licence notices in line with recommendations from TT	Thomas White