Age | Commit message (Collapse) | Author | |
---|---|---|---|
2017-03-24 | Propagate error if indexing method is unrecognised | Thomas White | |
2017-03-08 | Check unit cell parameters after prediction refinement | Thomas White | |
2017-03-08 | Allow indexing system to store its own data, independently of indexing methods | Thomas White | |
Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything. | |||
2017-02-02 | indexamajig: Add ping mechanism to avoid timing out when trying lots of indexers | Thomas White | |
2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
2016-02-03 | Set initial prediction parameters even when not doing prediction refinement | Thomas White | |
Silly bug fix. Beamtime programming FTL. | |||
2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
Adds yet another indexing option... | |||
2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
2016-01-29 | Use a fresh copy of the peak list for each new indexing method | Thomas White | |
2016-01-15 | Set indexing -nomulti as the default, and add a warning | Thomas White | |
2016-01-13 | Fix logic for -retry and -multi | Thomas White | |
2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
2015-12-18 | "Retry" mechanism for indexing | Thomas White | |
This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found. | |||
2015-09-15 | Formatting / fussiness | Thomas White | |
2015-09-15 | Update boilerplate comments | Thomas White | |
2015-09-15 | Remove unnecessary breaks | Thomas White | |
2015-09-15 | Implement Felix Indexer | Kenneth Beyerlein | |
2015-06-25 | Set MOSFLM default flags to include cell parameters, and add some checks | Thomas White | |
2015-06-25 | Tidy up some small leaks and memory bugs | Thomas White | |
2015-06-19 | Remove ReAx and GrainSpotter | Thomas White | |
Neither of these ever really worked, and better algorithms exist now. | |||
2015-06-18 | Merge branch 'tolstikova/dirax' | Thomas White | |
Conflicts: libcrystfel/src/index.h | |||
2015-04-20 | Improve error message | Thomas White | |
2015-04-20 | Add INDEXING_DEBUG | Thomas White | |
2015-02-11 | 'asdf' indexing method added | Alexandra Tolstikova | |
2014-11-25 | Add warning if the number of peaks is huge | Thomas White | |
2014-09-22 | Beam file removal, part I | Thomas White | |
2014-09-05 | Multi-event mode | Valerio Mariani | |
2014-05-08 | Strip out the "prepare_filename" rubbish | Thomas White | |
2014-02-23 | build_indexed_list(): Recognise "simulation" | Thomas White | |
Because we also need it to work when reading a stream. | |||
2013-09-13 | Add INDEXING_SIMULATION for streams made by partial_sim | Thomas White | |
2013-05-27 | Fix ReAx stack corruption | Thomas White | |
2013-03-01 | Update docs (and shake out buglets revealed along the way) | Thomas White | |
2013-02-19 | Add -cell and -nocell to indexing methods | Thomas White | |
2013-02-18 | Update XDS for new indexing subsystem | Thomas White | |
2013-02-18 | Merge branch 'cornelius/xds' into tom/multicrystal | Thomas White | |
Conflicts: libcrystfel/Makefile.am libcrystfel/src/index.c libcrystfel/src/index.h | |||
2013-02-18 | Read GrainSpotter's output properly | Thomas White | |
2013-02-18 | Merge branch 'tom/grainspotter' into tom/multicrystal | Thomas White | |
Conflicts: libcrystfel/Makefile.am libcrystfel/src/index.c libcrystfel/src/index.h | |||
2013-02-15 | Fussiness | Thomas White | |
2013-02-12 | Improve handling of indexing methods | Thomas White | |
2013-02-09 | Add cleanup functions for DirAx and MOSFLM | Thomas White | |
2013-02-09 | Complain if a unit cell is needed and not provided | Thomas White | |
2013-02-09 | Clarify lattice type information | Thomas White | |
2013-02-08 | Allow --indexing=none | Thomas White | |
2013-02-05 | WIP on updating partialator | Thomas White | |
2013-02-05 | Fixes for indexing pipeline | Thomas White | |
2013-02-05 | Indexing pipeline - "done"! | Thomas White | |
2013-02-04 | Indexing stuff | Thomas White | |
2013-02-01 | WIP on new indexing pipeline logic | Thomas White | |
2013-01-28 | Tried to fix errors in xds.c | Cornelius Gati | |
2013-01-28 | Changed index.c/.h | Cornelius Gati | |