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Making them opaque seemed like a nice idea, because all the indexers
could take care of their own command-line arguments. However, it
doesn't work at all when indexing is run via the API.
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This removes the big potential for confusion, which has happened several
times (see e.g. 095cbebaf6). It also fixes in-tree builds with CMake
(but seriously, always use out-of-tree builds).
Fixes #2.
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This allows the refined detector position to be used in a lot of places.
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These needed to be kept up to date with a call to map_all_peaks every
time anything changed - wavelength, detector position etc. Not doing so
has already led to bugs in another branch, and probably already causes
problems on this branch.
This patch eliminates the rx,ry,rz completely. Anyone who needs
reciprocal space coordinates for a peak is now responsible for calling
detgeom_transform_coords themselves.
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This allows the indexing method private options structures to be set up
easily.
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