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path: root/libcrystfel/src/indexers
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2021-03-12FromFile indexer: Move to libcrystfel/src/indexersThomas White
Also adds to meson.build
2021-03-11indexamajig: Add --max-indexer-threadsThomas White
This is a more general replacement for --pinkIndexer-thread-count.
2021-03-11PinkIndexer: Allocate peak lists when indexingThomas White
There doesn't seem to be any point in allocating them earlier, except to make space for some nice bugs.
2021-03-11PinkIndexer: Remove unnecessary castThomas White
2021-03-11PinkIndexer: Remove wide bandwidth stuffThomas White
This will return later in a more centralised form, if we decide to work further on wide bandwidth.
2021-03-11PinkIndexer: Use fake camera length for detector refinementThomas White
... and calculate the real value afterwards, checking that the detector is really flat enough for it to work.
2021-03-11PinkIndexer: Remove custom indexing checksThomas White
These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it.
2021-03-11detgeom_transform_coords: Take an additional detector shiftThomas White
This allows the refined detector position to be used in a lot of places.
2021-03-11Update copyright dates in libcrystfel/src/indexersThomas White
2021-03-11PinkIndexer: Don't use ImageFeature->rx,ry,rzThomas White
This brings it up to date after e7cf3911104f.
2021-03-11setup_indexing: Remove dtemplThomas White
There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object.
2021-03-11indexamajig: Add --wavelength-estimateThomas White
This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy
2021-03-05Mosflm: Add -n optionThomas White
This tells Mosflm not to try to load environ.def and defaults.def. We don't need either.
2020-12-07Get rid of ImageFeature->rx,ry,rzThomas White
These needed to be kept up to date with a call to map_all_peaks every time anything changed - wavelength, detector position etc. Not doing so has already led to bugs in another branch, and probably already causes problems on this branch. This patch eliminates the rx,ry,rz completely. Anyone who needs reciprocal space coordinates for a peak is now responsible for calling detgeom_transform_coords themselves.
2020-10-15TakeTwo: Limit number of seeds to 10, and reduce MAX_OBS_VECTORS to 300Thomas White
This gives a huge speed improvement, without sacrificing very much in indexing rate.
2020-10-07asdf: Fix incorrect units conversion for cell volumeThomas White
2020-10-07FussinessThomas White
Commented out debug message is no longer relevant
2020-10-07TakeTwo: Set tp->optsThomas White
2020-10-07TakeTwo: Fix get_chiral_holohedry for "hexagonal H"Thomas White
Fixes CRYS-240
2020-10-01asdf: Replace weird loop syntaxThomas White
2020-09-11xgandalf: Remove C99-style 'for' declarationsThomas White
2020-08-27TakeTwo: Remove internal declarationsThomas White
2020-08-20Add default_method_options()Thomas White
This allows the indexing method private options structures to be set up easily.
2020-08-10Start on converting pinkIndexer to DataTemplateThomas White
2020-08-10pinkIndexer: Remove detector updateThomas White
Overall detector offsets can now be done via the geometry file, and this is labelled as a hack. It doesn't actually do very much anyway, because the "updated" detector is thrown away for the next pattern. The updated detector is used only for subsequent indexing attempts on the same pattern.
2020-08-07Move indexers out of APIThomas White