| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-03-12 | FromFile indexer: Add skeleton cleanup procedure | Thomas White | |
| 2021-03-12 | FromFile indexer: Update for new event ID in image structure | Thomas White | |
| 2021-03-12 | FromFile indexer: Remove unnecessary casting/memset | Thomas White | |
| 2021-03-12 | FromFile indexer: Remove getcwd() | Thomas White | |
| It's only used for some error messages, and it doesn't compile anyway. | |||
| 2021-03-12 | FromFile indexer: Remove update_detector | Thomas White | |
| Everything should use the per-crystal detector shift now. | |||
| 2021-03-12 | FromFile indexer: Add missing semicolons | Thomas White | |
| 2021-03-12 | FromFile indexer: Strip trailing whitespace and sort out formatting | Thomas White | |
| 2021-03-12 | FromFile indexer: Move to libcrystfel/src/indexers | Thomas White | |
| Also adds to meson.build | |||
| 2021-03-11 | indexamajig: Add --max-indexer-threads | Thomas White | |
| This is a more general replacement for --pinkIndexer-thread-count. | |||
| 2021-03-11 | PinkIndexer: Allocate peak lists when indexing | Thomas White | |
| There doesn't seem to be any point in allocating them earlier, except to make space for some nice bugs. | |||
| 2021-03-11 | PinkIndexer: Remove unnecessary cast | Thomas White | |
| 2021-03-11 | PinkIndexer: Remove wide bandwidth stuff | Thomas White | |
| This will return later in a more centralised form, if we decide to work further on wide bandwidth. | |||
| 2021-03-11 | PinkIndexer: Use fake camera length for detector refinement | Thomas White | |
| ... and calculate the real value afterwards, checking that the detector is really flat enough for it to work. | |||
| 2021-03-11 | PinkIndexer: Remove custom indexing checks | Thomas White | |
| These conflict badly with CrystFEL's own checks, creating a horrible user and developer experience. Later, if we want to handle wide bandwidth beams, we will improve the central CrystFEL checks to support it. | |||
| 2021-03-11 | detgeom_transform_coords: Take an additional detector shift | Thomas White | |
| This allows the refined detector position to be used in a lot of places. | |||
| 2021-03-11 | Update copyright dates in libcrystfel/src/indexers | Thomas White | |
| 2021-03-11 | PinkIndexer: Don't use ImageFeature->rx,ry,rz | Thomas White | |
| This brings it up to date after e7cf3911104f. | |||
| 2021-03-11 | setup_indexing: Remove dtempl | Thomas White | |
| There is absolutely nothing useful that an indexing algorithm can do with the opaque DataTemplate object. | |||
| 2021-03-11 | indexamajig: Add --wavelength-estimate | Thomas White | |
| This is a more sensible non-indexer-specific and non-Xray-specific replacement for --pinkIndexer-override-photon-energy | |||
| 2021-03-05 | Mosflm: Add -n option | Thomas White | |
| This tells Mosflm not to try to load environ.def and defaults.def. We don't need either. | |||
| 2020-12-07 | Get rid of ImageFeature->rx,ry,rz | Thomas White | |
| These needed to be kept up to date with a call to map_all_peaks every time anything changed - wavelength, detector position etc. Not doing so has already led to bugs in another branch, and probably already causes problems on this branch. This patch eliminates the rx,ry,rz completely. Anyone who needs reciprocal space coordinates for a peak is now responsible for calling detgeom_transform_coords themselves. | |||
| 2020-10-15 | TakeTwo: Limit number of seeds to 10, and reduce MAX_OBS_VECTORS to 300 | Thomas White | |
| This gives a huge speed improvement, without sacrificing very much in indexing rate. | |||
| 2020-10-07 | asdf: Fix incorrect units conversion for cell volume | Thomas White | |
| 2020-10-07 | Fussiness | Thomas White | |
| Commented out debug message is no longer relevant | |||
| 2020-10-07 | TakeTwo: Set tp->opts | Thomas White | |
| 2020-10-07 | TakeTwo: Fix get_chiral_holohedry for "hexagonal H" | Thomas White | |
| Fixes CRYS-240 | |||
| 2020-10-01 | asdf: Replace weird loop syntax | Thomas White | |
| 2020-09-11 | xgandalf: Remove C99-style 'for' declarations | Thomas White | |
| 2020-08-27 | TakeTwo: Remove internal declarations | Thomas White | |
| 2020-08-20 | Add default_method_options() | Thomas White | |
| This allows the indexing method private options structures to be set up easily. | |||
| 2020-08-10 | Start on converting pinkIndexer to DataTemplate | Thomas White | |
| 2020-08-10 | pinkIndexer: Remove detector update | Thomas White | |
| Overall detector offsets can now be done via the geometry file, and this is labelled as a hack. It doesn't actually do very much anyway, because the "updated" detector is thrown away for the next pattern. The updated detector is used only for subsequent indexing attempts on the same pattern. | |||
| 2020-08-07 | Move indexers out of API | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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