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path: root/libcrystfel/src/integration.c
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2014-03-03Include background and peak height in streamThomas White
2014-02-13Fix previous commitThomas White
2014-02-13Don't proceed with integration if no suitable reference reflections were foundThomas White
2013-12-06Count implausible reflections when integrating with prof2dThomas White
2013-12-05Additions to show_peak_box()Thomas White
2013-11-29indexamajig: Add --int-diag=strongThomas White
2013-11-29Avoid '1 implausibly negative reflections'Thomas White
2013-11-28Add UNUSED to a couple of functionsThomas White
2013-11-25Don't refine rigid groupsThomas White
2013-11-25Fix centeringThomas White
2013-11-24show_peak_box(): Add indices and tidy upThomas White
2013-11-24Set red=0 if BG not OKThomas White
2013-11-24Break out setup_profile_boxes()Thomas White
2013-11-24Break out integrate_prof2d_once()Thomas White
2013-11-23indexamajig: Add --int-diag=implausibleThomas White
2013-11-23Don't call resolution_cutoff()Thomas White
2013-11-23Add --int-diag=negativeThomas White
2013-11-23More fixes for --int-diagThomas White
2013-11-23indexamajig: Add --int-diagThomas White
2013-11-23FormattingThomas White
2013-11-23Move debugging outputThomas White
2013-11-23Fix mean_var_area()Thomas White
2013-11-23Improve show_peak_box() (and its use)Thomas White
2013-11-23Break off integrate_rings_once()Thomas White
2013-10-10Avoid calling fit_bg() on a bad box (because it segfaults)Thomas White
2013-10-09Remove old resolution estimation codeThomas White
2013-10-09Center peaks on maximum brightness pixel over 3*backgroundThomas White
2013-10-09Integration verbosity fixesThomas White
2013-10-09Set matrix components to zero before calculating bg matrix integralsThomas White
2013-09-05configure: check for curses, and compile even if it's not availableThomas White
2013-08-12Improve show_matrix_eqn()Thomas White
2013-07-04Mark estimate_resolution() and estimate_mosaicity() as unusedThomas White
2013-06-25Restore sigma calculation with --integration=ringsThomas White
2013-06-21Reduce verbosityThomas White
2013-06-21Use tentative_intensity() (with fitted background) for "rings"Thomas White
2013-06-21Peak integrals are per boxThomas White
2013-06-20show_peak_box() and show_reference_profile(): refresh() before getch()Thomas White
2013-06-10Add commentThomas White
2013-06-02Fix RG delta output, and write only if actually calibratedThomas White
2013-06-02Refine rigid group positions and orientationsThomas White
2013-06-02Rigid group stuffThomas White
2013-06-01Fix lying commentThomas White
2013-06-01Extreme fussinessThomas White
2013-06-01Fix memory leaksThomas White
2013-06-01Calculate reference profile for all pixels in peak boxThomas White
This makes no difference to the actual profile fitting, which only uses the peak region. It just makes it easier to see if the reference profile is sensible or not.
2013-06-01More space in reference profile displayThomas White
2013-06-01prof2d: Use the same mask as ringsThomas White
2013-06-01Don't update integrated location from centroid after integrationThomas White
2013-06-01Fix rounding of pixel coordinatesThomas White
2013-05-31Remove duplicate (and incorrect) box boundary checkThomas White
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