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path: root/libcrystfel/src/integration.c
AgeCommit message (Collapse)Author
2013-10-10Avoid calling fit_bg() on a bad box (because it segfaults)Thomas White
2013-10-09Remove old resolution estimation codeThomas White
2013-10-09Center peaks on maximum brightness pixel over 3*backgroundThomas White
2013-10-09Integration verbosity fixesThomas White
2013-10-09Set matrix components to zero before calculating bg matrix integralsThomas White
2013-09-05configure: check for curses, and compile even if it's not availableThomas White
2013-08-12Improve show_matrix_eqn()Thomas White
2013-07-04Mark estimate_resolution() and estimate_mosaicity() as unusedThomas White
2013-06-25Restore sigma calculation with --integration=ringsThomas White
2013-06-21Reduce verbosityThomas White
2013-06-21Use tentative_intensity() (with fitted background) for "rings"Thomas White
2013-06-21Peak integrals are per boxThomas White
2013-06-20show_peak_box() and show_reference_profile(): refresh() before getch()Thomas White
2013-06-10Add commentThomas White
2013-06-02Fix RG delta output, and write only if actually calibratedThomas White
2013-06-02Refine rigid group positions and orientationsThomas White
2013-06-02Rigid group stuffThomas White
2013-06-01Fix lying commentThomas White
2013-06-01Extreme fussinessThomas White
2013-06-01Fix memory leaksThomas White
2013-06-01Calculate reference profile for all pixels in peak boxThomas White
This makes no difference to the actual profile fitting, which only uses the peak region. It just makes it easier to see if the reference profile is sensible or not.
2013-06-01More space in reference profile displayThomas White
2013-06-01prof2d: Use the same mask as ringsThomas White
2013-06-01Don't update integrated location from centroid after integrationThomas White
2013-06-01Fix rounding of pixel coordinatesThomas White
2013-05-31Remove duplicate (and incorrect) box boundary checkThomas White
2013-05-31Clear screen before showing new peak box or reference profileThomas White
2013-05-31Initialise reference_den to zeroThomas White
2013-05-31Initialise box offsets to zeroThomas White
2013-05-31Write final coordinates to the right placeThomas White
2013-05-31Fix a silly mistakeThomas White
2013-05-30Include initial centering offset in streamThomas White
2013-05-30Update peak coordinates after integrationThomas White
2013-05-30Remove unused parameterThomas White
2013-05-30Fix uninitialised saturation flagThomas White
2013-05-30Fussiness (extreme)Thomas White
2013-05-30indexamajig: Get rid of --min-integration-snrThomas White
This functionality belongs in process_hkl.
2013-05-30Tidy upThomas White
2013-05-28Add "blackhole" regions to peak integrationThomas White
Blackhole regions should be completely ignored, i.e. don't even call boxi() on such a pixel. This is distinct from pixels which can be used (e.g. for initial centroiding), but which happen not to be selected for background or peak integration.
2013-05-28Add "-cen"Thomas White
2013-05-28Attempt to center the box a bit before integrationThomas White
2013-05-28Improvements to debug outputThomas White
2013-05-28Colours in peak box display (via ncurses)Thomas White
2013-05-28Honour "-sat"Thomas White
2013-05-28Rename "refine" to "prof2d"Thomas White
2013-05-28Move "rings" integration to new peak box frameworkThomas White
2013-05-27Profile fitting stuffThomas White
2013-05-27Debugging outputThomas White
2013-05-27Code organisationThomas White
2013-05-27Do the actual profile fittingThomas White
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