Age | Commit message (Collapse) | Author | |
---|---|---|---|
2017-09-15 | Simplify indexing options | Thomas White | |
mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions. | |||
2017-08-31 | Set first argument when running external indexing programs | Thomas White | |
This makes sure they have names in process displays. | |||
2017-07-06 | Indexing engine private pointers should be void * | Thomas White | |
2016-09-07 | Mosflm: Create fake coordinates taking detector z into account | Thomas White | |
2016-07-28 | Check return values when writing to Mosflm or DirAx | Thomas White | |
2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
Adds yet another indexing option... | |||
2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
2015-09-14 | Fix space in Mosflm command | Thomas White | |
2015-09-14 | Revert "Use old MOSFLM indexing command when using -nocell" | Thomas White | |
This reverts commit d75b852f52b244796c0386c4f21cf36ca5bfcf70. | |||
2015-07-20 | Use old MOSFLM indexing command when using -nocell | Thomas White | |
2015-06-25 | Set MOSFLM default flags to include cell parameters, and add some checks | Thomas White | |
2015-06-25 | Try "mosflm" first, then try "ipmosflm" if it doesn't work | Thomas White | |
This allows a smooth transition from CCP4 to standalone version of mosflm, and hence an easy upgrade to newer versions. | |||
2015-06-19 | Tidy up new MOSFLM code | Thomas White | |
2015-06-19 | Send prior cell information to MOSFLM. | Takanori Nakane | |
Prior-cell algorithm will be available in the next public relase of MOSFLM. (Old version of MOSFLM simply ignores prior-cell keywords so that this change doesn't do any harm) | |||
2014-12-01 | Improve MOSFLM feedback | Thomas White | |
2014-11-26 | Read unique axis from unit cell (.cell) files | Thomas White | |
... and fix the MOSFLM logic again. | |||
2014-11-25 | Update mosflm logic for axis permutation warning, now that unit cell ↵ | Thomas White | |
parameters aren't compulsory | |||
2014-11-21 | Fix indexing flags check for mosflm | Thomas White | |
2014-09-22 | Beam file removal, part I | Thomas White | |
2014-09-19 | Introduce CrystFEL unit cell files | Thomas White | |
2014-08-19 | Use Gnulib forkpty() | Thomas White | |
2014-08-18 | gettimeofday() fixes | Thomas White | |
2014-05-08 | Strip out the "prepare_filename" rubbish | Thomas White | |
2013-09-13 | Monoclinic changes for MOSFLM | Thomas White | |
2013-06-02 | Fix const for MOSFLM space group | Thomas White | |
2013-06-01 | Fix multiple small memory leaks | Thomas White | |
2013-03-01 | Warn about MOSFLM unit cell settings | Thomas White | |
2013-02-19 | Add -cell and -nocell to indexing methods | Thomas White | |
2013-02-15 | "mosflm-nolatt" should not be sending "SYMM P1" | Thomas White | |
2013-02-15 | Check for lattice type should be done before calling match_cell() | Thomas White | |
2013-02-15 | Use "CRYSTAL R" to avoid having to uncenter the unit cell from MOSFLM | Thomas White | |
2013-02-12 | Improve handling of indexing methods | Thomas White | |
2013-02-11 | Add comment | Thomas White | |
2013-02-10 | Read lattice type and centering information back from MOSFLM | Thomas White | |
2013-02-10 | Formatting | Thomas White | |
2013-02-09 | Add cleanup functions for DirAx and MOSFLM | Thomas White | |
2013-02-09 | Complain if a unit cell is needed and not provided | Thomas White | |
2013-02-09 | Use H3 instead of H32 when asking for 'hexagonal H' | Thomas White | |
2013-02-09 | MOSFLM returns 'hexagonal H' if we ask for 'rhombohedral R'. Growl. | Thomas White | |
2013-02-09 | Clarify lattice type information | Thomas White | |
2013-02-08 | Small tweaks | Thomas White | |
2013-02-05 | WIP on bringing programs up to date | Thomas White | |
2013-02-04 | Indexing stuff | Thomas White | |
2012-12-03 | Fussiness | Thomas White | |
2012-12-03 | Use a less scary message for EINTR | Thomas White | |
This is almost completely benign, and happens when profiling. | |||
2012-11-21 | Show error information if forkpty() fails | Thomas White | |
2012-10-20 | Remove unused variable | Thomas White | |
2012-10-20 | Extreme fussiness | Thomas White | |
2012-10-19 | Update a comment | Thomas White | |