| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-01-10 | Mass update of copyright dates | Thomas White | |
| 2019-08-29 | mosflm: Rename check_cell to check_mosflm_cell | Thomas White | |
| Avoids duplicated function name | |||
| 2019-05-07 | Update all source code comments to Doxygen format | Thomas White | |
| 2018-09-28 | mosflm: Check for existence of unit cell before checking centering | Thomas White | |
| 2018-09-25 | Add warning about monoclinic I cells when using Mosflm | Thomas White | |
| 2018-09-20 | Don't give P centering to Mosflm when not providing cell parameters | Thomas White | |
| It's supposed to ignore it, but apparently it doesn't. | |||
| 2018-07-10 | Delete mosflm.lp and SUMMARY when cleaning up temporary folder | Thomas White | |
| 2018-06-28 | Tidy up files created by Mosflm and Felix during probe | Thomas White | |
| 2018-06-28 | Remove worker process numbers from temporary filenames | Thomas White | |
| Since we've had the separate worker folders for a long time, it's not needed any more. Removing them will make the temporary folders easier to clean up. | |||
| 2018-06-14 | Add CMake check to find forkpty() | Thomas White | |
| 2018-05-07 | Workaround for Mosflm detector description handling in 7.2.2 | Thomas White | |
| 2018-01-19 | Clean up indexing method probes | Thomas White | |
| 2017-10-23 | Check return values from fread/fgets | Thomas White | |
| 2017-10-18 | Check that dirax,felix,mosflm or xds are available at the start | Thomas White | |
| Avoids a confusing error message later. | |||
| 2017-10-18 | Add probe functions to indexing methods | Thomas White | |
| 2017-09-22 | Don't send detector and tolerance to indexing methods | Thomas White | |
| The detector isn't used for anything, and the tolerance is none of their business. | |||
| 2017-09-22 | Mosflm: Recognise P3 as hexagonal P lattice | Thomas White | |
| 2017-09-22 | If no cell params or lattice type, set nocell/nolatt at top level | Thomas White | |
| Another thing that the indexing engines don't need to be repsonsible for. | |||
| 2017-09-15 | Simplify indexing options | Thomas White | |
| mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions. | |||
| 2017-08-31 | Set first argument when running external indexing programs | Thomas White | |
| This makes sure they have names in process displays. | |||
| 2017-07-06 | Indexing engine private pointers should be void * | Thomas White | |
| 2016-09-07 | Mosflm: Create fake coordinates taking detector z into account | Thomas White | |
| 2016-07-28 | Check return values when writing to Mosflm or DirAx | Thomas White | |
| 2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
| 2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
| Adds yet another indexing option... | |||
| 2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
| 2015-09-14 | Fix space in Mosflm command | Thomas White | |
| 2015-09-14 | Revert "Use old MOSFLM indexing command when using -nocell" | Thomas White | |
| This reverts commit d75b852f52b244796c0386c4f21cf36ca5bfcf70. | |||
| 2015-07-20 | Use old MOSFLM indexing command when using -nocell | Thomas White | |
| 2015-06-25 | Set MOSFLM default flags to include cell parameters, and add some checks | Thomas White | |
| 2015-06-25 | Try "mosflm" first, then try "ipmosflm" if it doesn't work | Thomas White | |
| This allows a smooth transition from CCP4 to standalone version of mosflm, and hence an easy upgrade to newer versions. | |||
| 2015-06-19 | Tidy up new MOSFLM code | Thomas White | |
| 2015-06-19 | Send prior cell information to MOSFLM. | Takanori Nakane | |
| Prior-cell algorithm will be available in the next public relase of MOSFLM. (Old version of MOSFLM simply ignores prior-cell keywords so that this change doesn't do any harm) | |||
| 2014-12-01 | Improve MOSFLM feedback | Thomas White | |
| 2014-11-26 | Read unique axis from unit cell (.cell) files | Thomas White | |
| ... and fix the MOSFLM logic again. | |||
| 2014-11-25 | Update mosflm logic for axis permutation warning, now that unit cell ↵ | Thomas White | |
| parameters aren't compulsory | |||
| 2014-11-21 | Fix indexing flags check for mosflm | Thomas White | |
| 2014-09-22 | Beam file removal, part I | Thomas White | |
| 2014-09-19 | Introduce CrystFEL unit cell files | Thomas White | |
| 2014-08-19 | Use Gnulib forkpty() | Thomas White | |
| 2014-08-18 | gettimeofday() fixes | Thomas White | |
| 2014-05-08 | Strip out the "prepare_filename" rubbish | Thomas White | |
| 2013-09-13 | Monoclinic changes for MOSFLM | Thomas White | |
| 2013-06-02 | Fix const for MOSFLM space group | Thomas White | |
| 2013-06-01 | Fix multiple small memory leaks | Thomas White | |
| 2013-03-01 | Warn about MOSFLM unit cell settings | Thomas White | |
| 2013-02-19 | Add -cell and -nocell to indexing methods | Thomas White | |
| 2013-02-15 | "mosflm-nolatt" should not be sending "SYMM P1" | Thomas White | |
| 2013-02-15 | Check for lattice type should be done before calling match_cell() | Thomas White | |
| 2013-02-15 | Use "CRYSTAL R" to avoid having to uncenter the unit cell from MOSFLM | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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