Age | Commit message (Collapse) | Author | |
---|---|---|---|
2019-07-19 | peakFinder9: remove references to image.num_peaks etc | Thomas White | |
2019-05-14 | Remove image.num_peaks and num_saturated_peaks | Thomas White | |
These values were inconsistently set by different parts of the code, e.g. different peak search methods. num_saturated_peaks was even set during final integration. Now, the peak count is taken from the ImageFeatureList, so it's authoritative. | |||
2019-05-14 | Add documentation for search_peaks_peakfinder8 | Thomas White | |
2019-05-07 | Update all source code comments to Doxygen format | Thomas White | |
2019-03-06 | indexamajig: Rename --min-gradient to --min-squared-gradient | Thomas White | |
The eventual aim of this is to deprecate the "--min-gradient" option, resolving the long-standing confusion about whether this option is the gradient or the squared gradient. | |||
2018-06-10 | indexamajig: Estimate resolution based on peaks only | Thomas White | |
2018-05-30 | Changed sig_fac to min_snr | Yaroslav Gevorkov | |
2018-05-24 | Generalise peakfinder9 error messages, and fail if not compiled in | Thomas White | |
2018-05-24 | Move FDIP includes to top, and remove unnecessary ones | Thomas White | |
2018-05-24 | Update authorship and copyright dates | Thomas White | |
2018-05-24 | Formatting | Thomas White | |
2018-05-24 | Add "peakfinder9" | Yaroslav Gevorkov | |
2017-03-13 | Added saturated peak management to peakfinder8 | Valerio Mariani | |
2017-03-10 | Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation | Valerio Mariani | |
2016-10-14 | validate_peaks(): Remove drifting and proximity checks, and use original ↵ | Thomas White | |
coordinates We trust the HDF5 peaks, even if we can't see a peak there. That means we can't reliably take a centroid and "improve" the coordinates. In some cases, the centroiding procedure seems to be making the peak coordinates worse than they were originally. Now, the only remaining checks are: 1. Is the peak in a bad region of the detector? 2. Is it saturated? (but --use-saturated is the default) 3. If --check-hdf5-snr, is it above the minimum SNR? | |||
2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
2016-05-19 | integrate_peak(): Trap if pk_total=0 | Thomas White | |
2016-04-01 | Add adu_per_photon (distinct from adu_per_eV) | Thomas White | |
2016-01-30 | Revert "Allow peak check to pass just by accounting for more than 5 peaks" | Thomas White | |
This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later. | |||
2016-01-06 | search_peaks_in_panel(): Fix iteration bounds (again) | Thomas White | |
2015-12-18 | Allow peak check to pass just by accounting for more than 5 peaks | Thomas White | |
The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits. | |||
2015-12-17 | Clean up unused code | Thomas White | |
2015-11-06 | Fix iteration bounds for peak search | Thomas White | |
It was out by one because of some leftover characters from the previous version. | |||
2015-10-06 | Fussiness | Thomas White | |
2015-10-05 | search_peaks() / integrate_peak(): Remove image->data | Thomas White | |
2014-09-22 | Beam file removal, part I | Thomas White | |
2014-09-02 | integrate_peak(): Revert use of image->dp | Thomas White | |
2014-08-13 | Remove old bad region tests and use dp instead of data for integration of peaks | Thomas White | |
2014-08-13 | Respect all bad pixels during peak detection | Thomas White | |
Not just no_index panels and bad regions | |||
2014-08-13 | Remove integrate_peak() from the API | Thomas White | |
Good riddance. One of my least favourite routines. | |||
2014-08-11 | Take overlaps into account during integration | Thomas White | |
2014-07-24 | Fixes closest feature detection bug | Valerio Mariani | |
2014-03-28 | validate_peaks(): Count saturated peaks only if they are being rejected | Thomas White | |
2014-03-28 | integrate_peak(): Useful return codes | Thomas White | |
2014-03-26 | indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr | Thomas White | |
2013-08-20 | Re-order peak tests | Thomas White | |
The old version led to a curious situation where the number of saturated peaks could be much greater than the number of peaks, even without --no-use-saturated. | |||
2013-06-28 | Don't check max_adu during gradient search if --use-saturated is given | Thomas White | |
2013-06-26 | Track number of rejected saturated peaks | Thomas White | |
2013-05-27 | Initial integration stuff | Thomas White | |
2013-04-24 | Add docs/stream-format.txt and clarify count of saturated reflections | Thomas White | |
2013-04-16 | Restore immediate rejection of pixels above max_adu | Thomas White | |
2013-04-16 | Remove "use_saturated" argument to integrate_peak() | Thomas White | |
There are no side-effects to setting it either way, and the caller can just set saturated=NULL or ignore the result. | |||
2013-02-09 | Add '--res-cutoff' | Thomas White | |
2013-02-08 | Saturation counting fixes | Thomas White | |
2013-02-08 | Count saturated peaks and record in the file | Thomas White | |
2013-02-05 | Fixes for indexing pipeline | Thomas White | |
2013-02-04 | Indexing stuff | Thomas White | |
2013-01-30 | Peak integration changes | Thomas White | |
2013-01-04 | integrate_peak(): check that 'saturated' isn't NULL before using | Thomas White | |
Fixes a segfault | |||
2012-12-03 | Treat SNR=nan (=0/0) as below any SNR threshold | Thomas White | |