| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2014-03-28 | integrate_peak(): Useful return codes | Thomas White | |
| 2014-03-26 | indexamajig: Don't check SNR with --peaks=hdf5 unless given --check-hdf5-snr | Thomas White | |
| 2013-08-20 | Re-order peak tests | Thomas White | |
| The old version led to a curious situation where the number of saturated peaks could be much greater than the number of peaks, even without --no-use-saturated. | |||
| 2013-06-28 | Don't check max_adu during gradient search if --use-saturated is given | Thomas White | |
| 2013-06-26 | Track number of rejected saturated peaks | Thomas White | |
| 2013-05-27 | Initial integration stuff | Thomas White | |
| 2013-04-24 | Add docs/stream-format.txt and clarify count of saturated reflections | Thomas White | |
| 2013-04-16 | Restore immediate rejection of pixels above max_adu | Thomas White | |
| 2013-04-16 | Remove "use_saturated" argument to integrate_peak() | Thomas White | |
| There are no side-effects to setting it either way, and the caller can just set saturated=NULL or ignore the result. | |||
| 2013-02-09 | Add '--res-cutoff' | Thomas White | |
| 2013-02-08 | Saturation counting fixes | Thomas White | |
| 2013-02-08 | Count saturated peaks and record in the file | Thomas White | |
| 2013-02-05 | Fixes for indexing pipeline | Thomas White | |
| 2013-02-04 | Indexing stuff | Thomas White | |
| 2013-01-30 | Peak integration changes | Thomas White | |
| 2013-01-04 | integrate_peak(): check that 'saturated' isn't NULL before using | Thomas White | |
| Fixes a segfault | |||
| 2012-12-03 | Treat SNR=nan (=0/0) as below any SNR threshold | Thomas White | |
| 2012-11-30 | Fix uninitialised saturation flag | Thomas White | |
| 2012-11-29 | indexamajig: Add --use-saturated | Thomas White | |
| 2012-11-29 | Suppress "Couldn't sort reflections" message when there are no predicted peaks | Thomas White | |
| 2012-11-29 | indexamajig: Add --integrate-saturated | Thomas White | |
| 2012-10-22 | indexamajig: Validate (re-integrate, check bad regions etc) peaks from HDF5 | Thomas White | |
| 2012-10-22 | Fix (still) broken bad rectangle test | Thomas White | |
| 2012-10-21 | indexamajig: Record number of saturated reflections in stream | Thomas White | |
| 2012-10-20 | integrate_peak(): Restore check for bad region | Thomas White | |
| This fixes a regression introduced by ad2c84d0, predating the initial CrystFEL release. | |||
| 2012-10-02 | Use the correct panel number | Thomas White | |
| 2012-10-02 | Move unit cell utility stuff to separate module | Thomas White | |
| 2012-10-02 | Factorise background mask | Thomas White | |
| This fixes a speed regression introduced by dca1938a. | |||
| 2012-10-02 | Fix the other exit condition from integrate_peak() | Thomas White | |
| This REALLY fixes a significant data quality regression introduced by f668e3b3 (21st June 2012) | |||
| 2012-10-01 | Fix exit condition from integrate_peak() | Thomas White | |
| This fixes a significant data quality regression introduced by f668e3b3 (21st June 2012) | |||
| 2012-10-01 | make_bgMask() does not need to know the peak coordinates (any more) | Thomas White | |
| Also, s/ir_in/ir_inn/ | |||
| 2012-07-30 | Immediately reject pixels above max_adu in the peak search | Thomas White | |
| This leads to a big improvement in speed when (ab)using max_adu for gaps in the detector. | |||
| 2012-07-11 | More memory leaks | Thomas White | |
| 2012-07-11 | Fix a load of memory leaks | Thomas White | |
| 2012-06-28 | Warn user if any peaks were badrow culled | Thomas White | |
| 2012-06-28 | Don't lie about the number of badrow culled peaks | Thomas White | |
| 2012-06-28 | Remove peak_sep from detector geometry file, use ir_inn instead | Thomas White | |
| 2012-06-21 | More fussiness | Thomas White | |
| 2012-06-21 | More fussiness | Thomas White | |
| 2012-06-21 | Update authorship | Thomas White | |
| 2012-06-20 | Revert "Remove deprecated SNR cutoff" | Thomas White | |
| This reverts commit ae51e75490daf47e2deefe83e72a1f5c092fa023. | |||
| 2012-06-20 | Fussiness | Thomas White | |
| 2012-06-20 | Merge remote-tracking branch 'bitwiz/ken/int_noPkBg' | Thomas White | |
| 2012-06-13 | Mask peaks in the background calculation of integrate_peak. | Kenneth Beyerlein | |
| 2012-06-07 | Use max_adu only for final integration | Thomas White | |
| Saturated pixels seem to be OK during initial peak search | |||
| 2012-05-21 | ADU threshold is on pixel value, not photon-bg subtracted version | Thomas White | |
| 2012-05-21 | ADU limit in peak integration | Thomas White | |
| 2012-04-26 | Update the peak coordinates when doing --closer-peak | Thomas White | |
| This should make it much more obvious (via check-near-bragg) when the peak positions are wrong. | |||
| 2012-04-26 | Single point of truth for indices when sorting reflections | Thomas White | |
| 2012-04-26 | indexamajig: Make --no-closer-peak the default | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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