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path: root/libcrystfel/src/peaks.c
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2013-04-24Add docs/stream-format.txt and clarify count of saturated reflectionsThomas White
2013-04-16Restore immediate rejection of pixels above max_aduThomas White
2013-04-16Remove "use_saturated" argument to integrate_peak()Thomas White
There are no side-effects to setting it either way, and the caller can just set saturated=NULL or ignore the result.
2013-02-09Add '--res-cutoff'Thomas White
2013-02-08Saturation counting fixesThomas White
2013-02-08Count saturated peaks and record in the fileThomas White
2013-02-05Fixes for indexing pipelineThomas White
2013-02-04Indexing stuffThomas White
2013-01-30Peak integration changesThomas White
2013-01-04integrate_peak(): check that 'saturated' isn't NULL before usingThomas White
Fixes a segfault
2012-12-03Treat SNR=nan (=0/0) as below any SNR thresholdThomas White
2012-11-30Fix uninitialised saturation flagThomas White
2012-11-29indexamajig: Add --use-saturatedThomas White
2012-11-29Suppress "Couldn't sort reflections" message when there are no predicted peaksThomas White
2012-11-29indexamajig: Add --integrate-saturatedThomas White
2012-10-22indexamajig: Validate (re-integrate, check bad regions etc) peaks from HDF5Thomas White
2012-10-22Fix (still) broken bad rectangle testThomas White
2012-10-21indexamajig: Record number of saturated reflections in streamThomas White
2012-10-20integrate_peak(): Restore check for bad regionThomas White
This fixes a regression introduced by ad2c84d0, predating the initial CrystFEL release.
2012-10-02Use the correct panel numberThomas White
2012-10-02Move unit cell utility stuff to separate moduleThomas White
2012-10-02Factorise background maskThomas White
This fixes a speed regression introduced by dca1938a.
2012-10-02Fix the other exit condition from integrate_peak()Thomas White
This REALLY fixes a significant data quality regression introduced by f668e3b3 (21st June 2012)
2012-10-01Fix exit condition from integrate_peak()Thomas White
This fixes a significant data quality regression introduced by f668e3b3 (21st June 2012)
2012-10-01make_bgMask() does not need to know the peak coordinates (any more)Thomas White
Also, s/ir_in/ir_inn/
2012-07-30Immediately reject pixels above max_adu in the peak searchThomas White
This leads to a big improvement in speed when (ab)using max_adu for gaps in the detector.
2012-07-11More memory leaksThomas White
2012-07-11Fix a load of memory leaksThomas White
2012-06-28Warn user if any peaks were badrow culledThomas White
2012-06-28Don't lie about the number of badrow culled peaksThomas White
2012-06-28Remove peak_sep from detector geometry file, use ir_inn insteadThomas White
2012-06-21More fussinessThomas White
2012-06-21More fussinessThomas White
2012-06-21Update authorshipThomas White
2012-06-20Revert "Remove deprecated SNR cutoff"Thomas White
This reverts commit ae51e75490daf47e2deefe83e72a1f5c092fa023.
2012-06-20FussinessThomas White
2012-06-20Merge remote-tracking branch 'bitwiz/ken/int_noPkBg'Thomas White
2012-06-13Mask peaks in the background calculation of integrate_peak.Kenneth Beyerlein
2012-06-07Use max_adu only for final integrationThomas White
Saturated pixels seem to be OK during initial peak search
2012-05-21ADU threshold is on pixel value, not photon-bg subtracted versionThomas White
2012-05-21ADU limit in peak integrationThomas White
2012-04-26Update the peak coordinates when doing --closer-peakThomas White
This should make it much more obvious (via check-near-bragg) when the peak positions are wrong.
2012-04-26Single point of truth for indices when sorting reflectionsThomas White
2012-04-26indexamajig: Make --no-closer-peak the defaultThomas White
2012-04-26Remove PEAK_CLOSE (not used for anything)Thomas White
2012-04-05Fix iteration bounds for peak integrationThomas White
2012-03-29integrate_peak() should be staticThomas White
2012-03-26Make sure 'diffracting_resolution' is setThomas White
I'm sure I've fixed this bug many times before...
2012-03-12Update copyright notices to show actual contribution yearsThomas White
2012-03-09"Final" tweaks to integration and testsThomas White
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