CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2018-05-02	Remove unnecessary checks which have been superseded by in_network	Helen Ginn

2018-05-02	Change angle step size	Helen Ginn

2018-05-02	Various comments throughout code	Helen Ginn

2018-05-02	Now we refine an indexing solution to match all the observed vectors to the ↵	Helen Ginn
	nearest calculated vector before returning solution
2018-05-02	Give up if seed count already high	Helen Ginn

2018-05-02	Fix a for loop	Helen Ginn

2018-05-02	Change score for seed	Helen Ginn

2018-05-02	decompose rotation matrix into angle and axis	Helen Ginn

2018-05-02	rvec add rvec function	Helen Ginn

2018-05-02	Taketwo private structure takes care of duplicate solutions	Helen Ginn

2018-05-02	Fix typo	Helen Ginn

2018-05-02	Different limitations for making new seeds	Helen Ginn

2018-05-02	Return success even if rotation is not from full network membership	Helen Ginn

2018-05-02	Documentation is wrong notice	Helen Ginn

2018-05-02	Remove some shouty messages	Helen Ginn

2018-05-02	Reset default reciprocal distance to 0.15*1e10 m-1	Helen Ginn

2018-05-02	Search through entire vector array each time	Helen Ginn

2018-05-02	Now all seeds are found first, before sorting by score	Helen Ginn

2018-05-02	Change default distance to 0.12-something units for now	Helen Ginn

2018-05-02	Declare integer outside for loop	Helen Ginn

2018-05-02	Weed duplicates of seeds with new struct Seed.	Helen Ginn

2018-05-02	Temporary debug output	Helen Ginn

2018-05-02	Create a new Seed struct instead of passing around tiny little things to ↵	Helen Ginn
	various functions
2018-05-02	Beginning of support for ignoring previous solutions	Helen Ginn

2018-05-02	Theoretical vectors have their own structure including whether they are in ↵	Helen Ginn
	the asymmetric unit
2018-05-02	Fiddling with comments in text	Helen Ginn

2017-10-19	Add probe for TakeTwo	Thomas White

2017-09-22	Don't send detector and tolerance to indexing methods	Thomas White
	The detector isn't used for anything, and the tolerance is none of their business.
2017-09-15	Simplify indexing options	Thomas White
	mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions.
2017-07-24	Make struct taketwo_options const	Thomas White

2017-07-24	Ensure TakeTwo arrays get freed	Thomas White

2017-07-24	TakeTwo options again	Thomas White

2017-07-24	Formatting/copyright dates	Thomas White

2017-07-20	Change units for TakeTwo parameters	Thomas White

2017-07-18	Crashy for unknown reason, but have added the code for using custom params.	cppxfel

2017-07-06	indexamajig: Add TakeTwo-specific options	Thomas White

2017-07-06	Fix typo	Thomas White

2017-07-06	Remove unnecessary headers and move an include	Thomas White

2017-07-06	Use void pointers for indexing engine private stuff	Thomas White

2017-07-05	Shoved a bunch of the stuff being passed from function to function into ↵	cppxfel
	TakeTwoCell, and shoved gsl_vector allocation into it as well to reduce alloc events
2017-07-01	Adding a cutoff for maximum allowed vectors (100,000) to stop Tom's computer ↵	cppxfel
	(and others) falling apart again.
2017-06-30	Ridiculous ASCII art to increase prominance of citation	cppxfel

2017-06-30	Removed unnecessary returns and set functions to void, and removed ↵	cppxfel
	superfluous integer declaration
2017-06-30	Didn't use C99 code, fixing	cppxfel

2017-06-30	Yet more speed fiddles	cppxfel

2017-06-30	Removed some code, fixed some code, and so on and so forth	cppxfel

2017-06-29	WARNING - profanity - uploading to my server so I can gvalgrind	cppxfel

2017-06-29	Disable a check which wasn't acted upon to measure impact on speed	cppxfel

2017-06-29	Should not limit to proceeding vectors only when a new spot may have been ↵	cppxfel
	included\!
2017-06-29	Relaxation of tolerances	cppxfel