| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-05-07 | Update all source code comments to Doxygen format | Thomas White | |
| 2019-03-12 | TakeTwo: Restore correct matrix multiplication for solution | Thomas White | |
| 2019-03-11 | TakeTwo: take change in IntegerMatrix notation into account | Thomas White | |
| 2019-03-11 | Remove commented code | Thomas White | |
| 2019-03-11 | Get rid of cell_transform_gsl_reciprocal() | Thomas White | |
| It's confusing to have matrices acting on both real and reciprocal vectors. Let's standardise instead on transformations always applying to real-space cells. It was only used in one place. | |||
| 2019-03-11 | Use IntegerMatrix for all unit cell transformations | Thomas White | |
| Get rid of UnitCellTransformation, a thin wrapper which didn't do anything. | |||
| 2019-01-22 | TakeTwo: fix various memory leaks | Thomas White | |
| 2018-05-02 | Track solution network membership and scores for diagnostics | Helen Ginn | |
| 2018-05-02 | Correctly return the best matrix, not the last one | Helen Ginn | |
| 2018-05-02 | Limit distances of seeds only if cell seed count is quite high | Helen Ginn | |
| 2018-05-02 | Plug leaks. | Helen Ginn | |
| 2018-05-02 | Plug leaks | Helen Ginn | |
| 2018-05-02 | Generate theoretical vectors only once instead of every time the indexing is run | Helen Ginn | |
| 2018-05-02 | white space | Helen Ginn | |
| 2018-05-02 | Fussiness. | Helen Ginn | |
| 2018-05-02 | Deal with membership number higher up, and add a minimum threshold (of 5) | Helen Ginn | |
| 2018-05-02 | Mass movement of functions to higher up | Helen Ginn | |
| 2018-05-02 | Remove commented code | Helen Ginn | |
| 2018-05-02 | Fussiness. | Helen Ginn | |
| 2018-05-02 | Remove unnecessary checks which have been superseded by in_network | Helen Ginn | |
| 2018-05-02 | Change angle step size | Helen Ginn | |
| 2018-05-02 | Various comments throughout code | Helen Ginn | |
| 2018-05-02 | Now we refine an indexing solution to match all the observed vectors to the ↵ | Helen Ginn | |
| nearest calculated vector before returning solution | |||
| 2018-05-02 | Give up if seed count already high | Helen Ginn | |
| 2018-05-02 | Fix a for loop | Helen Ginn | |
| 2018-05-02 | Change score for seed | Helen Ginn | |
| 2018-05-02 | decompose rotation matrix into angle and axis | Helen Ginn | |
| 2018-05-02 | rvec add rvec function | Helen Ginn | |
| 2018-05-02 | Taketwo private structure takes care of duplicate solutions | Helen Ginn | |
| 2018-05-02 | Fix typo | Helen Ginn | |
| 2018-05-02 | Different limitations for making new seeds | Helen Ginn | |
| 2018-05-02 | Return success even if rotation is not from full network membership | Helen Ginn | |
| 2018-05-02 | Documentation is wrong notice | Helen Ginn | |
| 2018-05-02 | Remove some shouty messages | Helen Ginn | |
| 2018-05-02 | Reset default reciprocal distance to 0.15*1e10 m-1 | Helen Ginn | |
| 2018-05-02 | Search through entire vector array each time | Helen Ginn | |
| 2018-05-02 | Now all seeds are found first, before sorting by score | Helen Ginn | |
| 2018-05-02 | Change default distance to 0.12-something units for now | Helen Ginn | |
| 2018-05-02 | Declare integer outside for loop | Helen Ginn | |
| 2018-05-02 | Weed duplicates of seeds with new struct Seed. | Helen Ginn | |
| 2018-05-02 | Temporary debug output | Helen Ginn | |
| 2018-05-02 | Create a new Seed struct instead of passing around tiny little things to ↵ | Helen Ginn | |
| various functions | |||
| 2018-05-02 | Beginning of support for ignoring previous solutions | Helen Ginn | |
| 2018-05-02 | Theoretical vectors have their own structure including whether they are in ↵ | Helen Ginn | |
| the asymmetric unit | |||
| 2018-05-02 | Fiddling with comments in text | Helen Ginn | |
| 2017-10-19 | Add probe for TakeTwo | Thomas White | |
| 2017-09-22 | Don't send detector and tolerance to indexing methods | Thomas White | |
| The detector isn't used for anything, and the tolerance is none of their business. | |||
| 2017-09-15 | Simplify indexing options | Thomas White | |
| mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions. | |||
| 2017-07-24 | Make struct taketwo_options const | Thomas White | |
| 2017-07-24 | Ensure TakeTwo arrays get freed | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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