CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2017-10-19	Add probe for TakeTwo	Thomas White

2017-09-22	Don't send detector and tolerance to indexing methods	Thomas White
	The detector isn't used for anything, and the tolerance is none of their business.
2017-09-15	Simplify indexing options	Thomas White
	mosflm-cell-nolatt-multi-refine-bad-retry.... it's all getting a bit too much. This commit removes all the options from the indexing methods except for the prior information flags (cell/nocell and latt/nolatt). All the other options are now given at the top level with new indexamajig options, e.g. --no-multi and --no-retry. They are applied to all the methods, with no option to (say) use retry for one method and not for another. This also makes the "peak alignment test" default to OFF, and multi-lattice indexing ON. I think that the prediction refinement does a good enough job of checking the validity of indexing solutions, allowing us to turn off the alignment check which filters out most multi-lattice solutions.
2017-07-24	Make struct taketwo_options const	Thomas White

2017-07-24	Ensure TakeTwo arrays get freed	Thomas White

2017-07-24	TakeTwo options again	Thomas White

2017-07-24	Formatting/copyright dates	Thomas White

2017-07-20	Change units for TakeTwo parameters	Thomas White

2017-07-18	Crashy for unknown reason, but have added the code for using custom params.	cppxfel

2017-07-06	indexamajig: Add TakeTwo-specific options	Thomas White

2017-07-06	Fix typo	Thomas White

2017-07-06	Remove unnecessary headers and move an include	Thomas White

2017-07-06	Use void pointers for indexing engine private stuff	Thomas White

2017-07-05	Shoved a bunch of the stuff being passed from function to function into ↵	cppxfel
	TakeTwoCell, and shoved gsl_vector allocation into it as well to reduce alloc events
2017-07-01	Adding a cutoff for maximum allowed vectors (100,000) to stop Tom's computer ↵	cppxfel
	(and others) falling apart again.
2017-06-30	Ridiculous ASCII art to increase prominance of citation	cppxfel

2017-06-30	Removed unnecessary returns and set functions to void, and removed ↵	cppxfel
	superfluous integer declaration
2017-06-30	Didn't use C99 code, fixing	cppxfel

2017-06-30	Yet more speed fiddles	cppxfel

2017-06-30	Removed some code, fixed some code, and so on and so forth	cppxfel

2017-06-29	WARNING - profanity - uploading to my server so I can gvalgrind	cppxfel

2017-06-29	Disable a check which wasn't acted upon to measure impact on speed	cppxfel

2017-06-29	Should not limit to proceeding vectors only when a new spot may have been ↵	cppxfel
	included\!
2017-06-29	Relaxation of tolerances	cppxfel

2017-06-19	Reduced amount of gsl_matrix reallocation	cppxfel

2017-06-19	Changing cosine of angle to be most sensitive to 0.5 degrees	cppxfel

2017-06-19	Add observed angle check back in...	cppxfel

2017-06-19	Compile error sorted and some code re-added	cppxfel

2017-06-19	Theoretical speed improvements by replacing acos with comparison of cosines ↵	cppxfel
	for the quick check, but not necessarily good
2017-06-14	More fiddling	Helen Ginn

2017-06-14	Memory leak fixes and various tweaks	Helen Ginn

2017-06-14	Added symmetry checking - better indexing rate but something's holding back ↵	Helen Ginn
	a number of crystals
2017-05-18	Implement get_chiral_holohedry()	Thomas White

2017-05-18	Small fixes	Thomas White

2017-05-18	Formatting	Thomas White

2017-05-18	Formatting	Thomas White

2017-05-18	Fix uninitialised variable	Thomas White

2017-05-18	Various fiddles to add symmetry operations but not functional	Helen Ginn

2017-03-24	Now tries the shortest vectors first.	Helen Ginn

2017-01-18	Remove error messages	Helen Ginn

2017-01-18	One image has no more leaks from taketwo.c	Helen Ginn

2017-01-18	Significant reduction in leakage, not done yet.	Helen Ginn

2017-01-18	Fixed more memory errors	Helen Ginn

2017-01-18	Goodbye memory leaks!	Helen Ginn

2017-01-18	Fiddled with parameters, now nice for CPV17. Fixed a ton of bugs too	Helen Ginn

2017-01-17	Random indentation plus faffing with parameters.	Helen Ginn

2017-01-17	Removed all debug messages, nice and clean.	Helen Ginn

2017-01-17	General beginning of tidying and removing some debug statements and return ↵	Helen Ginn
	best solution if they're all too rubbish to hit the threshold - not tested
2017-01-17	Fiddles with parameters - more sensible now	Helen Ginn

2017-01-17	Fiddle with parameter - temporary	Helen Ginn