| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
| This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
| 2016-01-29 | felix: return the number of crystals | Thomas White | |
| 2016-01-29 | Use a fresh copy of the peak list for each new indexing method | Thomas White | |
| 2016-01-27 | asdf: Don't assume that the number of peaks == image_feature_count() | Thomas White | |
| Yes, really. Sorry about the crappy API. | |||
| 2016-01-15 | Use only the first two dimensions when using an external bad pixel mask or ↵ | Thomas White | |
| saturation map | |||
| 2016-01-15 | Set indexing -nomulti as the default, and add a warning | Thomas White | |
| 2016-01-13 | Fix logic for -retry and -multi | Thomas White | |
| 2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
| 2016-01-06 | search_peaks_in_panel(): Fix iteration bounds (again) | Thomas White | |
| 2015-12-18 | Saturation map fixes | Thomas White | |
| 2015-12-18 | Allow peak check to pass just by accounting for more than 5 peaks | Thomas White | |
| The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits. | |||
| 2015-12-18 | "Retry" mechanism for indexing | Thomas White | |
| This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found. | |||
| 2015-12-17 | Clean up unused code | Thomas White | |
| 2015-12-10 | Fix integration tests for new saturation map | Thomas White | |
| 2015-12-05 | Add option for per-pixel saturation values | Thomas White | |
| 2015-11-27 | Fix documentation | Thomas White | |
| 2015-11-27 | indexamajig: Write target unit cell into stream | Thomas White | |
| 2015-11-17 | Add a warning | Thomas White | |
| 2015-11-17 | Make gradient background fitting optional | Thomas White | |
| 2015-11-13 | Fussiness/add a FIXME | Thomas White | |
| 2015-11-10 | Improve single_panel_data_source() | Thomas White | |
| Fixes two problems: 1. Copious memory leaks via strdup() 2. Hardcoded default /data/data, not used anywhere else | |||
| 2015-11-10 | Remove old code | Thomas White | |
| 2015-11-10 | Fix hardcoded maximum gradient for integration | Thomas White | |
| 2015-11-06 | Fix iteration bounds for peak search | Thomas White | |
| It was out by one because of some leftover characters from the previous version. | |||
| 2015-11-03 | Merge branch 'tom/imagedata' | Thomas White | |
| 2015-10-12 | Fix extern / fussiness | Thomas White | |
| 2015-10-07 | Merge branch 'master' into tom/imagedata | Thomas White | |
| 2015-10-07 | hdfile_get_string_value(): Rearrange control flow | Thomas White | |
| This is not a nice function, and seemed to contain a weird stack corruption somewhere. It is still not a nice function, but at least no longer seems to contain a weird stack corruption. | |||
| 2015-10-07 | Fussiness | Thomas White | |
| 2015-10-06 | Fussiness | Thomas White | |
| 2015-10-05 | Final removal of image->data | Thomas White | |
| 2015-10-05 | search_peaks() / integrate_peak(): Remove image->data | Thomas White | |
| 2015-10-05 | unpack_panels() etc: Remove image->data | Thomas White | |
| 2015-10-05 | debodge_saturation(): Remove image->data | Thomas White | |
| 2015-10-05 | Add find_orig_panel_number() | Thomas White | |
| 2015-10-05 | hdfile_write_image(): Remove image->data | Thomas White | |
| 2015-10-05 | Remove use of image->data in record_image() | Thomas White | |
| 2015-10-05 | Read integers from HDF5 properly | Thomas White | |
| 2015-10-05 | Read variable-length HDF5 strings properly | Thomas White | |
| 2015-09-17 | Improve detection of out-of-memory condition when reading stream | Thomas White | |
| 2015-09-17 | Formatting | Thomas White | |
| 2015-09-15 | Felix: Copy centering into output unit cell | Thomas White | |
| 2015-09-15 | Split off Felix option processing, and fix string handling | Thomas White | |
| 2015-09-15 | Formatting / fussiness | Thomas White | |
| 2015-09-15 | Update boilerplate comments | Thomas White | |
| 2015-09-15 | Remove unnecessary breaks | Thomas White | |
| 2015-09-15 | Implement Felix Indexer | Kenneth Beyerlein | |
| 2015-09-14 | Fix space in Mosflm command | Thomas White | |
| 2015-09-14 | Revert "Use old MOSFLM indexing command when using -nocell" | Thomas White | |
| This reverts commit d75b852f52b244796c0386c4f21cf36ca5bfcf70. | |||
| 2015-08-14 | Fussiness | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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