CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2017-03-24	Mostly fussiness	Thomas White

2017-03-22	Completely revamped implementation of peakfinder8	Valerio Mariani

2017-03-15	largest_q(): Handle NULL detector	Thomas White

2017-03-13	Added management of max_num_peaks per image instead of per panel	Valerio Mariani

2017-03-13	Added saturated peak management to peakfinder8	Valerio Mariani

2017-03-13	Ask for C99 in configure.ac, remove weird C99 declarations	Thomas White

2017-03-11	Fixed some more bugs reported by Yaroslav	Valerio Mariani

2017-03-10	Fixed a couple of bugs reported by Tom	Valerio Mariani

2017-03-10	cell_print(): Show reciprocal angles	Thomas White

2017-03-10	Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation	Valerio Mariani

2017-03-08	Check unit cell parameters after prediction refinement	Thomas White

2017-03-08	Allow indexing system to store its own data, independently of indexing methods	Thomas White
	Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything.
2017-03-03	Return error code if cell can't be inverted	Thomas White

2017-02-16	Fix mask path placeholder check	Thomas White
	The mask paths for all panels have to have the same number of placeholders, but the masks do not have to have the same number of placeholders as the panel data blocks. This also tidies up a few excess strdup() calls, and removes partial_event_substitution() because retrieve_full_path() can now handle the number of placeholders being too small.
2017-02-02	Merge branch 'master' into taketwo	Thomas White

2017-02-02	indexamajig: Add ping mechanism to avoid timing out when trying lots of indexers	Thomas White

2017-02-01	asdf.c: Divide volume constraints by number of lattice points per unit cell. ↵	Alexandra Tolstikova
	Add F centering
2017-02-01	asdf.c: Divide volume constraints by number of lattice points per unit cell ↵	Alexandra Tolstikova
	since asdf always finds primitive cell
2017-02-01	Fix malloc fail due to integer overflow in N_triplets	Alexandra Tolstikova

2017-02-01	Change volume_min, volume_max and d_max when indexing=asdf-comb	Alexandra Tolstikova

2017-02-01	Change d_max according to the provided cell	Alexandra Tolstikova

2017-01-18	Remove error messages	Helen Ginn

2017-01-18	One image has no more leaks from taketwo.c	Helen Ginn

2017-01-18	Significant reduction in leakage, not done yet.	Helen Ginn

2017-01-18	Fixed more memory errors	Helen Ginn

2017-01-18	Goodbye memory leaks!	Helen Ginn

2017-01-18	Fiddled with parameters, now nice for CPV17. Fixed a ton of bugs too	Helen Ginn

2017-01-17	Random indentation plus faffing with parameters.	Helen Ginn

2017-01-17	Removed all debug messages, nice and clean.	Helen Ginn

2017-01-17	General beginning of tidying and removing some debug statements and return ↵	Helen Ginn
	best solution if they're all too rubbish to hit the threshold - not tested
2017-01-17	Fiddles with parameters - more sensible now	Helen Ginn

2017-01-17	Fiddle with parameter - temporary	Helen Ginn

2017-01-17	Remove flip required for cppxfel coordinate system	Helen Ginn

2017-01-17	Add rlp retrieval from peak list and tidy up the output to the screen a tad	Helen Ginn

2017-01-17	Committing all newest antics which DOES produce a decent solution for a ↵	Helen Ginn
	decent peak list...
2016-12-09	New polarisation correction	Thomas White

2016-11-25	Display line numbers at which stream is corrupted	Thomas White

2016-11-11	Fussiness	Helen Ginn

2016-11-11	Send all possible seeds through the seed-starter	Helen Ginn

2016-11-11	Find potential matches between observed and simulated vectors now returns a ↵	Helen Ginn
	list, not a single match, in preparation for being more thorough searching
2016-11-10	Fix 2theta calculation in locate_peak_on_panel()	Thomas White
	The "improved" version of this, added by 9b1374999 along with the new spot position calculation for out-of-plane panels, actually assumes that the reflection is at the exact Bragg condition. This is not a valid assumption here. The difference is small (<0.5 px), but made the prediction refinement gradients completely wrong.
2016-11-04	Add (more) warnings about unique axes	Thomas White

2016-11-04	Fixes the bug I discovered in Hamburg - closest_rot_mat needs to check whether	Helen Ginn
	the theta angle is the minimum or maximum angle or whether to add Pi.
2016-10-25	TEMPORARY horrible debugging stuff	Thomas White

2016-10-25	j_idx	Thomas White

2016-10-25	Sort the vectors according to distance, and use a larger tolerance	Thomas White

2016-10-24	Separate tolerance for matrix trace	Thomas White

2016-10-24	D'oh	Thomas White

2016-10-20	Fussiness	Thomas White

2016-10-20	Set tolerance	Thomas White