CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2015-08-14	Fix includes	Thomas White

2015-07-21	Add random partiality model	Thomas White

2015-07-21	Update API docs	Thomas White

2015-07-20	Use old MOSFLM indexing command when using -nocell	Thomas White

2015-07-18	Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfel	Thomas White

2015-07-17	partialator: Detect (in a terminal fashion) NAN partialities	Thomas White

2015-07-17	Fix format string for num_peaks	Thomas White

2015-07-17	Load bandwidth from stream with correct units	Thomas White
	D'oh!
2015-07-17	Check that XDS indexing options are compatible with data provided by the user	Valerio Mariani

2015-07-16	Check that sep is not null before checking its length	Valerio Mariani

2015-07-16	Throw an error if the path data ends with a slash	Valerio mariani

2015-07-15	Add warnings for asdf when compiled without FFTW	Thomas White

2015-07-14	Fix HDF5 memory leaks	Thomas White

2015-07-13	Slow down the status updates	Thomas White

2015-07-10	Temporary fix of infinite loop bug in asdf_reduce_cell()	Alexandra Tolstikova

2015-07-09	Tidy up error handling when given dodgy data locations	Thomas White

2015-07-09	Make noise filters use "dp" instead of "data"	Thomas White

2015-07-08	Move {x,y}_gradient to geometry.h	Thomas White

2015-07-08	Remove unnecessary calculations from prediction refinement	Thomas White

2015-07-07	Add mask_file to geometry file, to allow bad pixel mask to be stored separately	Thomas White

2015-07-03	Delete trailing whitespace	Thomas White

2015-06-26	Plug some more leaks	Thomas White

2015-06-26	Fix prediction refinement memory leaks	Thomas White

2015-06-26	Free crystal notes	Thomas White

2015-06-26	Work round unaligned read with DirAx	Thomas White
	Ok, just to keep Valgrind quiet.
2015-06-25	Move predict-refine to libcrystfel	Thomas White

2015-06-25	Set MOSFLM default flags to include cell parameters, and add some checks	Thomas White

2015-06-25	Try "mosflm" first, then try "ipmosflm" if it doesn't work	Thomas White
	This allows a smooth transition from CCP4 to standalone version of mosflm, and hence an easy upgrade to newer versions.
2015-06-25	Tidy up some small leaks and memory bugs	Thomas White

2015-06-24	Whitespace	Thomas White

2015-06-19	Tidy up new MOSFLM code	Thomas White

2015-06-19	Send prior cell information to MOSFLM.	Takanori Nakane
	Prior-cell algorithm will be available in the next public relase of MOSFLM. (Old version of MOSFLM simply ignores prior-cell keywords so that this change doesn't do any harm)
2015-06-19	Compile asdf only if FFTW is available	Thomas White

2015-06-19	Remove ReAx and GrainSpotter	Thomas White
	Neither of these ever really worked, and better algorithms exist now.
2015-06-18	Small tidying up for asdf	Thomas White

2015-06-18	Merge branch 'tolstikova/dirax'	Thomas White
	Conflicts: libcrystfel/src/index.h
2015-06-18	Fix bug in cell refinement	Alexandra Tolstikova

2015-06-18	Replace semaphore with a mutex	Thomas White
	A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself...
2015-06-17	Check c->n after cell reduction	Alexandra Tolstikova

2015-06-17	Use a POSIX semaphore for synchronising terminal access during indexing	Thomas White
	Nice side-effect: indexamajig -j and --int-diag can now be used together
2015-06-17	Fix fft in[N] array subscript calculation	Alexandra Tolstikova

2015-06-16	Check malloc return values	Alexandra Tolstikova

2015-06-11	Fixes to syntax of events.h header file	Valerio mariani

2015-06-09	match_cell(): Tidy up error handling when given a bogus lattice type	Thomas White

2015-05-27	Add detector_has_clen_references()	Thomas White

2015-05-19	Set default crystal resolution limit to infinity	Thomas White
	Makes much more sense than zero
2015-05-19	Add {get,set}_flag()	Thomas White

2015-05-19	Don't attempt to calculate detector position without detector structure	Thomas White
	... even if we are updating a previous reflection
2015-05-19	Set panel when reading reflections from stream	Thomas White

2015-05-13	partialator: Move scaling calculation into PR proper	Thomas White