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AgeCommit message (Collapse)Author
2023-07-28Implement data_template_rotate_group()Thomas White
2023-07-28Implement data_template_translate_group_{px,m}()Thomas White
2023-07-28Add data_template_show_hierarchy()Thomas White
2023-07-28Add detgeom_show_hierarchy()Thomas White
2023-07-28Transfer detector hierarchy to detgeomThomas White
2023-07-28DataTemplate: Parse hierarchical groupsThomas White
2023-07-28Strip out old rigid_group APIThomas White
2023-07-28Add profiling for MilleThomas White
2023-07-28Set sensible sigma values for MilleThomas White
2023-07-28Add Millepede measurementsThomas White
2023-07-28indexamajig: Hooks for MilleThomas White
2023-07-28Allow detgeom_free(NULL)Thomas White
2023-07-27Fix some more memory leaksThomas White
2023-07-26asdf: Fix a memory leakThomas White
2023-07-26intcontext_free: Free the intcontext structure itselfThomas White
2023-07-26Fix memory leaks in header cachingThomas White
2023-06-06MsgPack: Fix incorrect array index for bad pixel mapThomas White
2023-06-06Remove limit on number of children in the profiling graphThomas White
2023-06-06MsgPack: Complain if geometry file has placeholder dimensions or stacked panelsThomas White
2023-06-03Support Seedee format f8<Thomas White
2023-06-02Seedee: Handle u4< data typeThomas White
2023-05-19Fix untrue commentThomas White
2023-05-11Remove warning 'Cannot use adu_per_eV without image'Thomas White
The warning isn't helpful for users, but commit c2574910 causes it to appear many times on almost every indexamajig run. The best option is just to remove it.
2023-05-05Formatting (fussiness)Thomas White
2023-05-05Move is_{hdf5,cbf,cbfgz}_file() to image.cThomas White
This also improves is_hdf5_file() to use the proper file signature, not just the extension. See 9040220452a9cc02706159c21c78e43b374446cf.
2023-05-05Move peak search parameters into separate structureThomas White
This change takes the peak parameters structure from gui_project.h, moves it to libcrystfel/peaks.h and uses it everywhere. It should slightly reduce the hassle involved with adding a new parameter. Four parameters (noisefilter, median_filter, check_hdf5_snr, use_saturated) were previously not part of the GUI project structure. Now they are, via the new structure. However, they are not yet exposed via the GUI and just take their default values.
2023-05-02Remove image_write() and image_hdf5_write()Thomas White
This code isn't needed any more, now that we don't simulate images. It never worked very well - although we can read almost any sensible format, writing images that match an arbitrary schema is very difficult. See 41ed47a931e4c162c9a501981b6f19cd725f6e43 and https://gitlab.desy.de/thomas.white/crystfel/-/issues/81
2023-05-02Remove CMake build filesThomas White
It's already far behind parity with Meson, and getting worse.
2023-04-20Revert "Refuse to overwrite an existing stream"Thomas White
This was intended to help users avoid accidents. However, it seems to trip people up a lot, and creates problems such as breaking Slurm job pre-emption (re-scheduled job fails because output already exists). This reverts commit 6db9619ba5172b9e416a5939d375f5119aa652ff.
2023-03-31Reject mask if good/bad bits are specified without locationThomas White
This should avoid surprises if the location is accidentally missed out.
2023-03-31Factorise p->masks[j]Thomas White
Just to avoid repetition
2023-03-31Reject unrecognised mask directivesThomas White
2023-03-03libcrystfel: don't use fmemopen on aarch64-darwinPhilipp Middendorf
2023-02-17asdf: Restrict domain for search for peaks in frequency graphAlexandra Tolstikova
Previously, it was possible for the search to run over the part of the array initialised by FFTW.
2023-02-17image_read_peaks: Fix a typoThomas White
2023-02-17strip_extension: Handle short strings betterThomas White
2023-02-08indexamajig: Use static clen as --camera-length-estimate, if givenThomas White
This makes it work the same way as --wavelength-estimate.
2023-01-16asdf: Avoid integer overflow with number of tripletsThomas White
Co-authored-by: Alexandra Tolstikova <alexandra.tolstikova@desy.de> Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/76
2022-12-08Zaef peak search: set an upper limit on the number of peaksThomas White
This avoids an apparently infinite loop with some corner case input.
2022-12-08image_cbf_read: Abort if panel unpack failsThomas White
2022-11-08indexamajig: Remove warning when using --integration=noneThomas White
For cases where you need it (high performance online processing), it's very spammy.
2022-11-05Stream: increase maximum geometry file size to 1 megabyteThomas White
The old maximum was 64 kilobytes, and a 68k geometry file has now been seen in the wild. The limit is only needed to prevent runaway memory allocation in the case of a corrupted stream. So it's safe to increase it quite a lot.
2022-10-05data_template_get_2d_detgeom_if_possible: Avoid segfault with adu_per_eVThomas White
2022-10-05peakfinder8: Allocate big structures on heap instead of stackAlexandra Tolstikova
Fixes Valgrind errors and segfault with certain geometries
2022-10-05Merge branch 'pf8_faster'Thomas White
2022-09-22Add fast mode for peakfinder8Alexandra Tolstikova
2022-09-22all_panels_reference_same_clen: Handle missing unitsThomas White
2022-09-22Add missing prototypeThomas White
2022-09-22Implement data_template_get_2d_detgeom_if_possibleThomas White
It is horrible. But it's contained inside the DataTemplate module.
2022-09-21create_detgeom: Return detgeom structure rather than altering image argumentThomas White
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