CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2013-11-24	Fix an oops in Histogram	Thomas White

2013-11-24	show_peak_box(): Add indices and tidy up	Thomas White

2013-11-24	Set red=0 if BG not OK	Thomas White

2013-11-24	Break out setup_profile_boxes()	Thomas White

2013-11-24	Break out integrate_prof2d_once()	Thomas White

2013-11-23	indexamajig: Add --int-diag=implausible	Thomas White

2013-11-23	Don't call resolution_cutoff()	Thomas White

2013-11-23	Add --int-diag=negative	Thomas White

2013-11-23	More fixes for --int-diag	Thomas White

2013-11-23	indexamajig: Add --int-diag	Thomas White

2013-11-23	Formatting	Thomas White

2013-11-23	Add Histogram, and plot integration test results	Thomas White

2013-11-23	Move debugging output	Thomas White

2013-11-23	Fix mean_var_area()	Thomas White

2013-11-23	Improve show_peak_box() (and its use)	Thomas White

2013-11-23	Break off integrate_rings_once()	Thomas White

2013-10-29	Change XDS default behaviour, and add warning about axis permutation	Thomas White

2013-10-10	Avoid calling fit_bg() on a bad box (because it segfaults)	Thomas White

2013-10-09	Remove old resolution estimation code	Thomas White

2013-10-09	Center peaks on maximum brightness pixel over 3*background	Thomas White

2013-10-09	Integration verbosity fixes	Thomas White

2013-10-09	Set matrix components to zero before calculating bg matrix integrals	Thomas White

2013-10-08	Read scalar values from HDF5 files as 0d arrays	Thomas White
	Historically, scalar values have been represented in our data files as 1d arrays with size=1. Now they are (more correctly) written as 0d arrays. This change allows CrystFEL to read both.
2013-09-13	Monoclinic changes for MOSFLM	Thomas White

2013-09-13	Stop PR when mean change in partiality is small	Thomas White

2013-09-13	Fix incorrect handling of monoclinic C cells	Thomas White

2013-09-13	Add INDEXING_SIMULATION for streams made by partial_sim	Thomas White

2013-09-05	Remove vestigial get_wavelength()	Thomas White

2013-09-05	configure: check for curses, and compile even if it's not available	Thomas White

2013-08-20	Re-order peak tests	Thomas White
	The old version led to a curious situation where the number of saturated peaks could be much greater than the number of peaks, even without --no-use-saturated.
2013-08-12	Improve show_matrix_eqn()	Thomas White

2013-08-08	Add show_matrix()	Thomas White

2013-08-08	Show determinant when complaining about a non-integer matrix result	Thomas White

2013-07-31	Set C=0 for gsl_cblas_dgemm()	Thomas White

2013-07-31	Revert refinement step if too many reflections are lost	Thomas White

2013-07-24	Iteration over reflection list should include other reflections with same ↵	Thomas White
	asymmetric indices This fixes a >2 year old bug in the reflection list, and a bug in tests/list_check.c which allowed it to go undetected for so long. The main situation where it would have caused problems is when asymmetric_indices() was called on a reflection list containing symmetrically equivalent reflections. The only core CrystFEL program which does this is partialator. compare_hkl uses asymmetric_indices(), but the reflections are already guaranteed to be asymmetric by that point (because check_list_symmetry() has been called).
2013-07-24	update_partialities(): Scratch list no longer needed	Thomas White

2013-07-05	Fix uninitialised rval for XDS	Thomas White

2013-07-05	Fix uninitialised rval for GrainSpotter	Thomas White

2013-07-04	Fix pointer type	Thomas White

2013-07-04	Mark estimate_resolution() and estimate_mosaicity() as unused	Thomas White

2013-07-04	Update docs	Thomas White

2013-06-28	Don't check max_adu during gradient search if --use-saturated is given	Thomas White

2013-06-26	Track number of rejected saturated peaks	Thomas White

2013-06-25	Restore sigma calculation with --integration=rings	Thomas White

2013-06-21	Reduce verbosity	Thomas White

2013-06-21	Use tentative_intensity() (with fitted background) for "rings"	Thomas White

2013-06-21	Peak integrals are per box	Thomas White

2013-06-21	Convert angle to degrees for GrainSpotter	Thomas White

2013-06-20	show_peak_box() and show_reference_profile(): refresh() before getch()	Thomas White