CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2014-12-12	Deep copy of dim_structure when needed	Valerio Mariani

2014-12-10	Avoid strlen()	Thomas White

2014-12-10	Formatting	Thomas White

2014-12-09	Fix reading of profile_radius	Thomas White

2014-12-09	Capitalise all warnings	Thomas White

2014-12-09	Avoid bottoming out precision for beam parameters in stream	Thomas White

2014-12-09	read_stream_reflections_2_3(): set redundancy to 1	Thomas White

2014-12-02	Fix huge memory leak in hdfsee when re-loading events.	Takanori Nakane
	Probably we need image_free().
2014-12-01	Improve MOSFLM feedback	Thomas White

2014-11-28	Check for rlow<rhigh only if reflection is excited and hits detector	Thomas White

2014-11-28	Remove twod_mapping function	Valerio Mariani

2014-11-28	indexamajig: Report implausibly negative reflections only after final ↵	Thomas White
	integration
2014-11-27	Fix typo in error message	Thomas White

2014-11-27	Fix pre-merging Poisson error calculation for low photon counts	Thomas White

2014-11-26	Do not predict reflections beyond the resolution limit in the first place	Thomas White
	This is significantly faster than predicting to the edge then applying the resolution cutoff. With the "new" way of estimating the resolution limit, there's no need to integrate first.
2014-11-26	Fix conversion to Angstroms for diffraction_resolution_limit in stream (whoops!)	Thomas White

2014-11-26	Show panel name and correct coordinates in int-diag	Thomas White

2014-11-26	Add find_intersections_to_res()	Thomas White

2014-11-26	Read unique axis from unit cell (.cell) files	Thomas White
	... and fix the MOSFLM logic again.
2014-11-26	Fix for problems with dataspace creation in write_location	Valerio Mariani

2014-11-25	Formatting	Thomas White

2014-11-25	Update mosflm logic for axis permutation warning, now that unit cell ↵	Thomas White
	parameters aren't compulsory
2014-11-25	Add warning if the number of peaks is huge	Thomas White

2014-11-25	Tidy up after removing compression	Thomas White

2014-11-24	Fixed stream I/O across different versions	Valerio Mariani

2014-11-21	Moved fs ss rerrangement to get_detector_geometry	Valerio Mariani

2014-11-21	Formatting, and fix a comment	Thomas White

2014-11-21	Disable compression when writing HDF5 files	Thomas White
	Compression halves the processing speed when simulating realistic patterns (with background etc)
2014-11-21	Fix indexing flags check for mosflm	Thomas White

2014-11-18	pattern_sim: Save photon energy at specified location	Thomas White

2014-11-17	Break hdf5_write_image() down a bit	Thomas White

2014-11-17	pattern_sim: Add saturation	Thomas White

2014-11-17	hdf5_read2() should not call hdfile_close()	Thomas White

2014-11-17	Tolerate having no wavelength	Thomas White

2014-11-14	Ensure initialisation of as,bs,cs	Thomas White
	This is mostly just to shut the compiler up about the lack of initialisation.
2014-11-14	Allow free_dim_structure(NULL)	Thomas White

2014-11-14	Revert update of old deprecated reflection list format	Thomas White
	Since nothing writes in this modified format (including fs, ss and pn), it makes no sense to be able to read it. This commit reverts a small part of c194bf77.
2014-11-14	Allow geometry files to not contain photon_energy	Thomas White

2014-11-14	Background need not be an integer	Thomas White

2014-11-13	Remove unused variables	Thomas White

2014-11-13	Whitespace	Thomas White

2014-11-13	Fix stream reader	Takanori Nakane

2014-11-13	Fixed parsing of CRYST1	Takanori Nakane

2014-11-10	Fussiness	Thomas White

2014-11-10	Copy and Replace when saving geometry	Valerio Mariani

2014-11-09	Record number of implausibly negative reflections in stream	Thomas White

2014-11-09	Fix brackets	Thomas White

2014-11-09	Remove old beam-parameters.c	Thomas White

2014-11-02	Report filename on terminal if it has implausibly negative reflections	Thomas White

2014-10-31	get_detector_geometry(): Avoid NULL dereference when beam=NULL	Thomas White