| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-07-01 | Store all "=" fields from stream, not just HDF5 ones | Thomas White | |
| 2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
| 2016-05-20 | Fixed problem with parsing of geometry file | Valerio Mariani | |
| 2016-05-19 | integrate_peak(): Trap if pk_total=0 | Thomas White | |
| 2016-04-21 | Use correct dataspace when reading HDF5 strings | Thomas White | |
| 2016-04-13 | Fix event enumeration | Thomas White | |
| I broke it. Sorry about that. | |||
| 2016-04-13 | Formatting | Thomas White | |
| 2016-04-12 | Merge branch 'tom/testing' | Thomas White | |
| 2016-04-01 | Add adu_per_photon (distinct from adu_per_eV) | Thomas White | |
| 2016-04-01 | Remove "Too few paired peaks" warnings | Thomas White | |
| We know that the prediction refinement is working. These "warnings" are really just synonyms for "indexing failed for this pattern". No big deal. | |||
| 2016-04-01 | Fix silly bugs and tidy up | Thomas White | |
| 2016-03-31 | Handle placeholders in --hdf5-peaks | Thomas White | |
| 2016-03-24 | Fussiness/formatting | Thomas White | |
| 2016-03-24 | Simplify event enumeration a bit | Thomas White | |
| 2016-03-24 | event_path_placeholder_subst(): Simplify a bit | Thomas White | |
| 2016-03-24 | Don't use %C conversion | Thomas White | |
| 2016-03-21 | This is CrystFEL 0.6.20.6.2 | Thomas White | |
| 2016-03-15 | write_detector_geometry_2(): Clean up | Thomas White | |
| Fixes CRYS-138: hdfsee wipes geometry if new file is saved over old one | |||
| 2016-03-01 | mark_resolution_range_as_bad(): Skip if nothing to do | Thomas White | |
| This speeds up indexamajig quite a bit | |||
| 2016-02-29 | More output when reading reflections failed | Thomas White | |
| 2016-02-29 | Don't predict 000 | Thomas White | |
| 2016-02-29 | asdf: Check array bounds before using | Thomas White | |
| 2016-02-29 | Formatting | Thomas White | |
| 2016-02-23 | Fixed bug with memspace size in write_location | Valerio Mariani | |
| 2016-02-09 | Fix a NULL dereference | Thomas White | |
| 2016-02-05 | felix: fix seg fault | Ken Beyerlein | |
| 2016-02-03 | Set initial prediction parameters even when not doing prediction refinement | Thomas White | |
| Silly bug fix. Beamtime programming FTL. | |||
| 2016-01-30 | Revert "Allow peak check to pass just by accounting for more than 5 peaks" | Thomas White | |
| This reverts commit 693aae4d2219632d15174fe4c4f9d0526d6166c4. Reverting because this allows a very large number (~100% "indexing rate") of false solutions to get through simply by slackening the peak detection parameters. Since we know that "-multi" indexing doesn't work well at the moment, let's fix this properly later. | |||
| 2016-01-30 | indexamajig: Restore --no-refine | Thomas White | |
| Adds yet another indexing option... | |||
| 2016-01-29 | Perform prediction refinement straight after indexing | Thomas White | |
| This allows indexing to be attempted again (either a new method or with "retry") if the prediction refinement fails, increasing overall indexing rate. Side-effect: there are some hoops which would need to be jumped through to store the profile radius before refinement and hence enable scripts/plot-predict-refine to work. For now, we'll ignore this as it's clear that the prediction refinement is working. | |||
| 2016-01-29 | felix: return the number of crystals | Thomas White | |
| 2016-01-29 | Use a fresh copy of the peak list for each new indexing method | Thomas White | |
| 2016-01-27 | asdf: Don't assume that the number of peaks == image_feature_count() | Thomas White | |
| Yes, really. Sorry about the crappy API. | |||
| 2016-01-15 | Use only the first two dimensions when using an external bad pixel mask or ↵ | Thomas White | |
| saturation map | |||
| 2016-01-15 | Set indexing -nomulti as the default, and add a warning | Thomas White | |
| 2016-01-13 | Fix logic for -retry and -multi | Thomas White | |
| 2016-01-08 | Make indexing "retry" and "multi" optional | Thomas White | |
| 2016-01-06 | search_peaks_in_panel(): Fix iteration bounds (again) | Thomas White | |
| 2015-12-18 | Saturation map fixes | Thomas White | |
| 2015-12-18 | Allow peak check to pass just by accounting for more than 5 peaks | Thomas White | |
| The "old" criterion is still allowed for a pass, but would filter out multi-lattice hits. | |||
| 2015-12-18 | "Retry" mechanism for indexing | Thomas White | |
| This increases the indexing rate a bit in situations where there are lots of weak peaks which, although they may be real, don't help indexing. The weakest 10% of peaks get cut out and the indexing re-run. This also allows multiple hits to be indexed, using the "inelegant peak subtraction method", by retrying indexing in the same way after deleting peaks which are accounted for by the lattice just found. | |||
| 2015-12-17 | Clean up unused code | Thomas White | |
| 2015-12-10 | Fix integration tests for new saturation map | Thomas White | |
| 2015-12-05 | Add option for per-pixel saturation values | Thomas White | |
| 2015-11-27 | Fix documentation | Thomas White | |
| 2015-11-27 | indexamajig: Write target unit cell into stream | Thomas White | |
| 2015-11-17 | Add a warning | Thomas White | |
| 2015-11-17 | Make gradient background fitting optional | Thomas White | |
| 2015-11-13 | Fussiness/add a FIXME | Thomas White | |
| 2015-11-10 | Improve single_panel_data_source() | Thomas White | |
| Fixes two problems: 1. Copious memory leaks via strdup() 2. Hardcoded default /data/data, not used anywhere else | |||
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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path: root/libcrystfel