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2014-01-20RNG overhaulThomas White
Previously, we were using random(), which is really really bad.
2014-01-20pattern_sim: Overhaul and add SASE spectrum simulationThomas White
2013-12-17Fix a few compiler warningsThomas White
2013-12-06This is CrystFEL 0.5.20.5.2Thomas White
2013-12-06Count implausible reflections when integrating with prof2dThomas White
2013-12-05Additions to show_peak_box()Thomas White
2013-12-03Update docsThomas White
2013-11-29indexamajig: Add --int-diag=strongThomas White
2013-11-29RefList: Increase maximum index to 511Thomas White
2013-11-29Avoid '1 implausibly negative reflections'Thomas White
2013-11-28Add UNUSED to a couple of functionsThomas White
2013-11-25Don't refine rigid groupsThomas White
2013-11-25Fix centeringThomas White
2013-11-24Fix an oops in HistogramThomas White
2013-11-24show_peak_box(): Add indices and tidy upThomas White
2013-11-24Set red=0 if BG not OKThomas White
2013-11-24Break out setup_profile_boxes()Thomas White
2013-11-24Break out integrate_prof2d_once()Thomas White
2013-11-23indexamajig: Add --int-diag=implausibleThomas White
2013-11-23Don't call resolution_cutoff()Thomas White
2013-11-23Add --int-diag=negativeThomas White
2013-11-23More fixes for --int-diagThomas White
2013-11-23indexamajig: Add --int-diagThomas White
2013-11-23FormattingThomas White
2013-11-23Add Histogram, and plot integration test resultsThomas White
2013-11-23Move debugging outputThomas White
2013-11-23Fix mean_var_area()Thomas White
2013-11-23Improve show_peak_box() (and its use)Thomas White
2013-11-23Break off integrate_rings_once()Thomas White
2013-10-29Change XDS default behaviour, and add warning about axis permutationThomas White
2013-10-10Avoid calling fit_bg() on a bad box (because it segfaults)Thomas White
2013-10-09Remove old resolution estimation codeThomas White
2013-10-09Center peaks on maximum brightness pixel over 3*backgroundThomas White
2013-10-09Integration verbosity fixesThomas White
2013-10-09Set matrix components to zero before calculating bg matrix integralsThomas White
2013-10-08Read scalar values from HDF5 files as 0d arraysThomas White
Historically, scalar values have been represented in our data files as 1d arrays with size=1. Now they are (more correctly) written as 0d arrays. This change allows CrystFEL to read both.
2013-09-13Monoclinic changes for MOSFLMThomas White
2013-09-13Stop PR when mean change in partiality is smallThomas White
2013-09-13Fix incorrect handling of monoclinic C cellsThomas White
2013-09-13Add INDEXING_SIMULATION for streams made by partial_simThomas White
2013-09-05Remove vestigial get_wavelength()Thomas White
2013-09-05configure: check for curses, and compile even if it's not availableThomas White
2013-08-20Re-order peak testsThomas White
The old version led to a curious situation where the number of saturated peaks could be much greater than the number of peaks, even without --no-use-saturated.
2013-08-12Improve show_matrix_eqn()Thomas White
2013-08-08Add show_matrix()Thomas White
2013-08-08Show determinant when complaining about a non-integer matrix resultThomas White
2013-07-31Set C=0 for gsl_cblas_dgemm()Thomas White
2013-07-31Revert refinement step if too many reflections are lostThomas White
2013-07-24Iteration over reflection list should include other reflections with same ↵Thomas White
asymmetric indices This fixes a >2 year old bug in the reflection list, and a bug in tests/list_check.c which allowed it to go undetected for so long. The main situation where it would have caused problems is when asymmetric_indices() was called on a reflection list containing symmetrically equivalent reflections. The only core CrystFEL program which does this is partialator. compare_hkl uses asymmetric_indices(), but the reflections are already guaranteed to be asymmetric by that point (because check_list_symmetry() has been called).
2013-07-24update_partialities(): Scratch list no longer neededThomas White
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