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2020-10-04Solved problem concerning prof_radius and diff_lim calculation, prof_radius ↵Pascal Hogan-Lamarre
and diff_lim removed from sol file
2020-09-17read filename and event with dynamical allocationPascal Hogan-Lamarre
2020-09-17removed the crystal number key from the solution file, deduced during readingPascal Hogan-Lamarre
2020-09-17multiple crystal per shot implemented (to be tested)Pascal Hogan-Lamarre
2020-09-16if-conditions to prevent modifying the resolution limit value read in the ↵Pascal Hogan-Lamarre
solution file
2020-09-16if-conditions that prevent modification of the profile_radius read from filePascal Hogan-Lamarre
2020-09-16modified the keys to use an event stringPascal Hogan-Lamarre
2020-09-16cleaning, remove double statementsPascal Hogan-Lamarre
2020-09-16fromfile indexer in a separate filePascal Hogan-Lamarre
2020-09-14Removed global variable, include profile_radius and diff_limit in sol file, ↵Pascal Hogan-Lamarre
cleaned up warning messages, not working yet for multi-crystals
2020-08-06changed status messages for file indexerRobert Buecker
2020-08-05hotfix for from-file indexerRobert Buecker
2020-08-05adding some versbosity to file indexerRobert Bücker
2020-07-19last minute changesPascal Hogan-Lamarre
2020-07-09unit cell vectors are correct, space group missingPascal Hogan-Lamarre
2020-05-12Add missing newline in error messageThomas White
2020-05-12Fix silly mistake in cell reductionThomas White
2020-04-03Break down hdfile_get_string_value()Thomas White
There are just too many cases here. Variable/fixed length, array of either of those, with/without event structure. And that's just for real strings (not numbers that will be converted to strings). For now, I think the only unhandled case is an array of variable length strings. We can fix this when/if one turns up in the wild.
2020-03-31hdfile_get_string_value: Handle arrays of fixed length stringsThomas White
2020-03-31Catch NULL event in make_dataspacesThomas White
2020-03-31Improve error message in hdfile_get_string_value()Thomas White
2020-03-16hdfile_get_string_value: Handle arrays of variable length stringsThomas White
2020-03-13uncenter_cell(): Convert R to PThomas White
Otherwise, the cell comparison doesn't recognise the cells as the same, breaking indexing with an R reference cell. Unfortunately, the resulting cell after comparison by compare_r_c_p still comes out as P, but that doesn't seem like a big loss. To get it strictly correct, we'd need some way of tracking through the information that the cell got "uncentered" from R to P, even though the matrix is an identity.
2020-03-09integrate_rings_once: Handle case where reflection is negative by < 1 photonThomas White
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-28hdfile_get_value(): Check that ev->dim_length > 0 before looking in dim_entriesThomas White
2020-02-11Fix comment typoThomas White
2020-02-11Remove vestigial HAVE_CPU_AFFINITYThomas White
2020-02-11Don't use gzbuffer if it's not availableThomas White
Enables compatability with zlib < 1.2.3.5
2020-02-07add error message for too small reflection radius when using electronsYaroslav Gevorkov
2020-02-07fix error message for photon_energy not known at indexer_prepareYaroslav Gevorkov
2020-02-04Handle CRLF line terminators in geometry filesThomas White
This was broken by d62367db8fee57, which was some enabling work for reading geometry info from streams.
2020-01-10Mass update of copyright datesThomas White
2019-12-13pair_peaks: Don't attempt to pair 000Thomas White
Normally the beam centre is masked out or not on the detector. However, when it is, pairing with 000 causes gradients to come out as NaN and the prediction refinement to fail.
2019-11-18PinkIndexer documentationYaroslav Gevorkov
2019-11-15Add partiality model GGPMWolfgang Brehm
2019-11-13fix long variable names in argp_optionYaroslav Gevorkov
2019-11-13rename "overriden" to "custom"Yaroslav Gevorkov
2019-11-13catch input errorYaroslav Gevorkov
2019-11-13add option --pinkIndexer-override-visible-energy-rangeYaroslav Gevorkov
2019-11-13Fix peak check logic for multiple crystalsThomas White
It seems that the code wasn't properly updated when multi-crystal indexing was introducted. This "continue" statement didn't do anything.
2019-11-05bug fix for standard bandwidth in pinkIndexerYaroslav Gevorkov
2019-11-05bug fix in Ewald sphere width calculationYaroslav Gevorkov
2019-10-29add "override" beam options to pinkIndexerYaroslav Gevorkov
2019-10-24polarisation_correction: Use symmetric indicesThomas White
2019-10-24polarisation_correction: Scale the sigma as wellThomas White
2019-10-22xds: Fix handedness of unit cellThomas White
Previously, it was wired to give left handed cells.
2019-10-22Add more warningsThomas White
2019-10-22Add some warnings and assertionsThomas White
2019-10-22reduce_g6: Fix sign criterion for step 3Thomas White
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