Age | Commit message (Collapse) | Author | |
---|---|---|---|
2016-10-19 | Fix iteration bounds | Thomas White | |
2016-10-19 | Final hooky bits | Thomas White | |
2016-10-19 | Generate the resulting cell | Thomas White | |
2016-10-19 | Add transform_cell_gsl() | Thomas White | |
2016-10-19 | gen_theoretical_vecs | Thomas White | |
2016-10-19 | rot_mats_are_similar | Thomas White | |
2016-10-19 | Fussiness (extreme) | Thomas White | |
2016-10-18 | Fix up last commit | Thomas White | |
2016-10-18 | secondTwizzleMatrix | Thomas White | |
2016-10-18 | Implmement closest_rot_mat | Thomas White | |
2016-10-18 | Fixup last commit | Thomas White | |
2016-10-18 | Rotate obs2 | Thomas White | |
2016-10-18 | rotation_between_vectors | Thomas White | |
2016-10-18 | ANGLE_TOLERANCE | Thomas White | |
2016-10-18 | Stuff to make it compile | Thomas White | |
2016-10-17 | Initial TakeTwo import | Thomas White | |
Only changes from Helen's code so far: 1. Stripping trailing spaces 2. Tweaking includes (<> -> "") 3. Adding initial CrystFEL hooks at the bottom of taketwo.c 4. Moving definition of struct SpotVec to taketwo.c 5. Removing prototype for run_taketwo from taketwo.h (comment moved to .c) 6. Authorship/copyright boilerplate | |||
2016-10-14 | validate_peaks(): Remove drifting and proximity checks, and use original ↵ | Thomas White | |
coordinates We trust the HDF5 peaks, even if we can't see a peak there. That means we can't reliably take a centroid and "improve" the coordinates. In some cases, the centroiding procedure seems to be making the peak coordinates worse than they were originally. Now, the only remaining checks are: 1. Is the peak in a bad region of the detector? 2. Is it saturated? (but --use-saturated is the default) 3. If --check-hdf5-snr, is it above the minimum SNR? | |||
2016-10-10 | Fix bad regions | Thomas White | |
Previously, this was broken when not using a mask | |||
2016-10-10 | Add missing newline | Thomas White | |
2016-10-10 | Fussiness / boilerplate | Thomas White | |
2016-10-10 | Added detector shift to crystal structure, wrote get and get functions | Valerio Mariani | |
2016-10-07 | XDS: Clean up open files | Thomas White | |
2016-10-06 | hdf5_write_image(): Write the correct data | Thomas White | |
2016-10-06 | hdf5_write_image(): Use correct dataspace for writing | Thomas White | |
2016-10-06 | pattern_sim: Fix loop bounds in record_image() | Thomas White | |
2016-09-12 | Add newline at end of geometry file in stream, if not already present | Thomas White | |
2016-09-12 | Restore loading of saturation map | Thomas White | |
2016-09-12 | Restore loading of bad pixel map | Thomas White | |
2016-09-07 | XDS: Create fake coordinates taking detector z into account | Thomas White | |
2016-09-07 | Mosflm: Create fake coordinates taking detector z into account | Thomas White | |
2016-08-16 | Add reflist_add_command_and_version() | Thomas White | |
2016-08-16 | Read and write RefList notes to reflection list files | Thomas White | |
2016-08-16 | Add notes to RefList | Thomas White | |
2016-08-11 | Take rail direction as a vector rather than individual x,y,z values | Thomas White | |
Just to make it more consistent with fs/ss directions | |||
2016-08-11 | Use whole of 'value' field when parsing top-level geometry options | Thomas White | |
This is a long-standing bug, which we got away with up to now because top-level options with more than just a single number or location were rare or possibly never used at all. | |||
2016-08-10 | Ensure z component is set in dir_conv() | Thomas White | |
2016-08-10 | Set default clen_for_centering | Thomas White | |
If the rail vector is +z (the default), then the value doesn't matter. However, it still mustn't be NaN. | |||
2016-08-10 | Allow peak table location to be given in geometry file | Thomas White | |
2016-08-09 | Remove debugging output | Thomas White | |
2016-08-09 | Add rail direction to geometry | Thomas White | |
2016-07-29 | Use z components in prediction | Thomas White | |
2016-07-29 | Add z direction to panel directions and update get_q_for_panel() | Thomas White | |
2016-07-29 | Set image->dp in hdf5_read() | Thomas White | |
2016-07-28 | Check return values when writing to Mosflm or DirAx | Thomas White | |
2016-07-01 | Provide dataspace when reading data, mask and satmap | Thomas White | |
2016-07-01 | Remove slab-relative coordinates from geoptimiser | Thomas White | |
2016-07-01 | Store all "=" fields from stream, not just HDF5 ones | Thomas White | |
2016-07-01 | No more slab-relative coordinates in libcrystfel | Thomas White | |
2016-05-20 | Fixed problem with parsing of geometry file | Valerio Mariani | |
2016-05-19 | integrate_peak(): Trap if pk_total=0 | Thomas White | |