Age | Commit message (Collapse) | Author | |
---|---|---|---|
2017-07-05 | Update docs | Thomas White | |
2017-07-05 | Rearrange quaternion declarations so that gtk-doc can cope | Thomas White | |
The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together. | |||
2017-07-05 | Shoved a bunch of the stuff being passed from function to function into ↵ | cppxfel | |
TakeTwoCell, and shoved gsl_vector allocation into it as well to reduce alloc events | |||
2017-07-01 | Adding a cutoff for maximum allowed vectors (100,000) to stop Tom's computer ↵ | cppxfel | |
(and others) falling apart again. | |||
2017-06-30 | Ridiculous ASCII art to increase prominance of citation | cppxfel | |
2017-06-30 | Removed unnecessary returns and set functions to void, and removed ↵ | cppxfel | |
superfluous integer declaration | |||
2017-06-30 | Didn't use C99 code, fixing | cppxfel | |
2017-06-30 | Yet more speed fiddles | cppxfel | |
2017-06-30 | Removed some code, fixed some code, and so on and so forth | cppxfel | |
2017-06-29 | WARNING - profanity - uploading to my server so I can gvalgrind | cppxfel | |
2017-06-29 | Disable a check which wasn't acted upon to measure impact on speed | cppxfel | |
2017-06-29 | Should not limit to proceeding vectors only when a new spot may have been ↵ | cppxfel | |
included\! | |||
2017-06-29 | Relaxation of tolerances | cppxfel | |
2017-06-27 | Dummy setup bits for INDEXING_NONE | Thomas White | |
This doesn't do much except for preventing a possibly confusing warning message about "Failed to prepare indexing method none". You can actually do --indexing=none,asdf, but don't tell anyone... | |||
2017-06-27 | If prediction refinement fails, don't carry on and check the cell | Thomas White | |
Doing so results in one crystal being counted as bad twice, which messes up the logic which follows. | |||
2017-06-23 | Accept either cbf/cbf.h or cbflib/cbf.h | Thomas White | |
You get cbflib/cbf.h if you install CBFlib from source, and cbf/cbf.h if using the package manager in Fedora, probably other systems as well. We definitely don't want to include the cbf or cbflib folder in the include path, because CBFlib may bring its own HDF5 headers, which we don't want to touch with a bargepole. | |||
2017-06-21 | Close more leftover HDF5 handles | Thomas White | |
2017-06-21 | Don't compile CBF stuff without CBFlib | Thomas White | |
2017-06-21 | Close leftover HDF5 handles | Thomas White | |
2017-06-21 | hdf5_read2(): Fix exit path | Thomas White | |
Bad pixel map is not allocated at this point. | |||
2017-06-19 | Reduced amount of gsl_matrix reallocation | cppxfel | |
2017-06-19 | Changing cosine of angle to be most sensitive to 0.5 degrees | cppxfel | |
2017-06-19 | Add observed angle check back in... | cppxfel | |
2017-06-19 | Compile error sorted and some code re-added | cppxfel | |
2017-06-19 | Theoretical speed improvements by replacing acos with comparison of cosines ↵ | cppxfel | |
for the quick check, but not necessarily good | |||
2017-06-14 | More fiddling | Helen Ginn | |
2017-06-14 | Memory leak fixes and various tweaks | Helen Ginn | |
2017-06-14 | Added symmetry checking - better indexing rate but something's holding back ↵ | Helen Ginn | |
a number of crystals | |||
2017-05-18 | Implement get_chiral_holohedry() | Thomas White | |
2017-05-18 | Small fixes | Thomas White | |
2017-05-18 | Formatting | Thomas White | |
2017-05-18 | Formatting | Thomas White | |
2017-05-18 | Fix uninitialised variable | Thomas White | |
2017-05-18 | Various fiddles to add symmetry operations but not functional | Helen Ginn | |
2017-05-09 | Allow reading CBF without geometry (only for simple viewing) | Thomas White | |
2017-05-09 | Add missing checks | Thomas White | |
2017-05-05 | Show filename of CBF file if it can't be read | Thomas White | |
2017-05-05 | Fill in photon energy, clen and adu for CBFs | Thomas White | |
This needed a bit of reorganisation and clarification of who is repsonsible for loading what. The low-level file loaders, e.g. hdf5_read and hdf5_read2 in hdf5-file.c or cbf_read in image.c, are responsible. There is a helper function adjust_centering_for_rail in detector.h which they can use. It seems like this could be done more cleanly at the imagefile layer. However, we need to make sure that the "old" hdfile API still works on its own, even when not accessed via the new imagefile API. | |||
2017-05-05 | Allow location of photon energy (eg in HDF5 file) to start with any character | Thomas White | |
2017-05-05 | Read CBF data | Thomas White | |
2017-05-03 | Detect CBF files, interface bits | Thomas White | |
2017-05-03 | hdfile_set_image(): Remove panel argument | Thomas White | |
Seems to have been added in 2014 and is not used at the moment | |||
2017-05-03 | HDF5 reading under new API | Thomas White | |
2017-05-02 | Skeleton image file API | Thomas White | |
2017-05-02 | Initial CBF stuff | Thomas White | |
2017-04-13 | Add half-pixel offset for peakfinder8 | Thomas White | |
Like zaef, the pixel indices need to be converted to geometrical coordinates. This increases the indexing rate by about 5% in my test. | |||
2017-04-13 | hdf5_read2(): Free buffers when read fails | Thomas White | |
2017-03-31 | Offset peak locations from HDF5 or CXI files by 0.5,0.5 | Thomas White | |
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset. | |||
2017-03-24 | Merge branch 'taketwo' of ssh://git.bitwiz.org.uk/crystfel into taketwo | Helen Ginn | |
2017-03-24 | Now tries the shortest vectors first. | Helen Ginn | |