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2020-07-29Actually load the maskThomas White
2020-07-29Add missing castThomas White
2020-07-29Factorise HDF5 hyperslab loadingThomas White
2020-07-29Use bad regions, no_index and NaN/inf flags in new image loading APIThomas White
2020-07-29Add a couple of FIXMEsThomas White
2020-07-29Check that dp/mask/sat exist before freeingThomas White
2020-07-29Push CBF/GZ split point further downThomas White
2020-07-29Remove bad pixel mask stuff from unpack_panels_dtempl and image_read_hdf5Thomas White
Will be replaced shortly by dedicated routines
2020-07-29Add a FIXMEThomas White
2020-07-29Add missing va_start/va_endThomas White
Needed even though we don't iterate the list
2020-07-29Catch some error conditionsThomas White
2020-07-29Add void pointer to log message functionsThomas White
Also add LogMsgFunc typedef and move functions up in utils.c, because progress_bar() also needs the stderr_lock.
2020-07-29Move stderr_lock prototype to utils.hThomas White
2020-07-29libcrystfel plumbing to allow ERROR/STATUS messages in GUIThomas White
2020-07-29Convert peakfinder8 to use new APIThomas White
2020-07-29Actually run indexamajigThomas White
2020-07-29Add str_peaksearch()Thomas White
Will be needed for passing peak search parameters to indexamajig from GUI
2020-07-29Implement basic CBF loading via new APIThomas White
2020-07-29Peak search stuffThomas White
2020-07-29Add image_get_feature_const() and image_feature_list_copy()Thomas White
2020-07-29Convert peak detection to use detgeomThomas White
2020-07-29Remove badrow cullingThomas White
Very old, not used at all, and better solved by masking bad regions.
2020-07-29ImageFeatureList: Store panel number, not pointerThomas White
This makes the conversion to DataTemplate/detgeom MUCH easier.
2020-07-29Remove unused fields in struct detgeomThomas White
2020-07-29image_free(): Free more stuffThomas White
2020-07-29Use both APIs for pixbuf rendering (prefer new)Thomas White
2020-07-29create_detgeom(): Set n_panelsThomas White
2020-07-29image_read_hdf5(): Allocate bad mapsThomas White
2020-07-29Create detgeom structure on image loadThomas White
2020-07-29Move colour scale and pixbuf rendering to libcrystfelThomas White
Also, split into two files (colscale and render), and remove TIFF stuff.
2020-07-29Basic image loading via new DataTemplate APIThomas White
2020-07-29FussinessThomas White
2020-07-29get_event_from_event_string: Handle NULL eventThomas White
2020-07-29Initial DataTemplate parser (copied from get_detector_geometry)Thomas White
2020-07-29Add safe_strdup() to utilsThomas White
2020-07-29Move load_entire_file() to utilsThomas White
2020-07-29Clean up detgeom.hThomas White
2020-07-29Sketch out DataTemplate APIThomas White
2020-05-12Add missing newline in error messageThomas White
2020-05-12Fix silly mistake in cell reductionThomas White
2020-04-03Break down hdfile_get_string_value()Thomas White
There are just too many cases here. Variable/fixed length, array of either of those, with/without event structure. And that's just for real strings (not numbers that will be converted to strings). For now, I think the only unhandled case is an array of variable length strings. We can fix this when/if one turns up in the wild.
2020-03-31hdfile_get_string_value: Handle arrays of fixed length stringsThomas White
2020-03-31Catch NULL event in make_dataspacesThomas White
2020-03-31Improve error message in hdfile_get_string_value()Thomas White
2020-03-16hdfile_get_string_value: Handle arrays of variable length stringsThomas White
2020-03-13uncenter_cell(): Convert R to PThomas White
Otherwise, the cell comparison doesn't recognise the cells as the same, breaking indexing with an R reference cell. Unfortunately, the resulting cell after comparison by compare_r_c_p still comes out as P, but that doesn't seem like a big loss. To get it strictly correct, we'd need some way of tracking through the information that the cell got "uncentered" from R to P, even though the matrix is an identity.
2020-03-09integrate_rings_once: Handle case where reflection is negative by < 1 photonThomas White
2020-03-04add option -pinkIndexer-max-refinement-disbalanceYaroslav Gevorkov
2020-02-28hdfile_get_value(): Check that ev->dim_length > 0 before looking in dim_entriesThomas White
2020-02-11Fix comment typoThomas White
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