Age | Commit message (Collapse) | Author | |
---|---|---|---|
2021-11-15 | pair_peaks: Use reciprocal space distance instead of pixel distance | Thomas White | |
The reciprocal space distance limit has been set as one third of the smallest inter-Bragg spacing. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/38 | |||
2021-11-15 | Ensure that crystal doesn't end up with invalid reflist after prediction ↵ | Thomas White | |
refinement | |||
2021-10-28 | Make symmetry operation parser re-entrant | Thomas White | |
Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/1 | |||
2021-10-28 | Add 'mask_panel_edges' to geometry file | Thomas White | |
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/27 | |||
2021-10-28 | Add a comment | Thomas White | |
2021-10-26 | Remove detector rail direction altogether | Thomas White | |
This got missed out by accident in the conversion to DataTemplate, but absolutely no-one noticed. In the meantime, my views on how the geometry files should work have changed somewhat. I don't want to maintain the extra complexity here when it isn't even clear that it will eliminate the need to re-refine geometry for each camera length. This commit just takes the rail direction stuff out of the documentation and the geometry file parser. Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/50 | |||
2021-10-26 | create_detgeom: Factorise panel template | Thomas White | |
2021-10-22 | pair_peaks: Skip reflections if the indices are too large | Thomas White | |
2021-10-22 | reflection_new: Check indices are not too large | Thomas White | |
Previously, the combination of reflection_new and add_refl_to_list gave a way to side-step the usual check that the indices were not larger than 512. This causes corruption of the RefList, so much be avoided. | |||
2021-10-20 | Remove unused parameter | Thomas White | |
2021-10-20 | Fix column types for plain MTZ output | Thomas White | |
2021-10-20 | Add "plain" MTZ file layout, distinct from "Bijvoet" layout | Thomas White | |
Closes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/52 | |||
2021-10-20 | Set crystal name in MTZ files | Thomas White | |
When using the GUI, it will be set to the corresponding indexing result name. | |||
2021-10-20 | Reject geometry file if wavelength isn't specified | Thomas White | |
2021-10-20 | image_hdf5_read_peaks_cxi: Make sure array is big enough | Thomas White | |
2021-10-20 | Fussiness | Thomas White | |
2021-10-20 | image_hdf5_read_header_to_cache: Make space for terminator | Thomas White | |
2021-10-20 | Add a comment | Thomas White | |
2021-10-13 | Meson: Get zlib via wrap | Thomas White | |
2021-10-13 | Make zlib dependency optional | Thomas White | |
2021-10-13 | Remove NCurses dependency | Thomas White | |
It's only used once, to get background colours for 'indexamajig --int-diag', itself a rarely used feature. The dependency itself seems to cause problems for some people, particularly those not using system libraries for everything. So I think it's better just to remove it, and use ANSI escape codes directly. | |||
2021-10-07 | Meson: Get PinkIndexer via wrap | Thomas White | |
2021-10-07 | Meson: Get Xgandalf via wrap | Thomas White | |
2021-09-30 | Doxygen: More improvements | Thomas White | |
2021-09-29 | Add missing Doxyfile-version.in | Thomas White | |
2021-09-29 | Doxygen: Exclude datatemplate_priv.h and uthash.h | Thomas White | |
2021-09-29 | Remove old references | Thomas White | |
2021-09-29 | Doxygen: Set EXTRACT_LOCAL_CLASSES = YES | Thomas White | |
This avoids that all of the private structures get included in the API documentation. | |||
2021-09-29 | Doxygen: Remove old references and optimise for C | Thomas White | |
2021-09-29 | Fix Doxygen version numbers | Thomas White | |
This also removes Doxygen from the CMake build system. It doesn't seem worth trying to make it work both ways. Fixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/48 | |||
2021-09-17 | Warn if in-memory CBF is attempted | Thomas White | |
2021-09-17 | Handle headers from in-memory HDF5s | Thomas White | |
2021-09-17 | Handle in-memory HDF5s | Thomas White | |
2021-09-17 | Avoid pointless passing of image/event | Thomas White | |
2021-09-09 | CMake: Ensure rpath is set correctly in libcrystfel.so. | Takanori Nakane | |
2021-09-07 | assplode(): Add some assertions | Thomas White | |
2021-09-07 | get_equiv: Bail out on error path | Thomas White | |
Error handling is sloppy here. | |||
2021-09-07 | check_box: Fix type used for sizeof | Thomas White | |
2021-09-07 | TakeTwo: Check for empty observed vector list | Thomas White | |
2021-09-07 | image_hdf5_read_header_to_cache: Remove double free on error path | Thomas White | |
2021-09-07 | fom_select_reflection_pairs: Keep zeroed intensities in dataset | Thomas White | |
Note the re-ordering of tasks, and the removal of 'continue'. | |||
2021-09-07 | init_fom: Clean up on error path | Thomas White | |
2021-09-07 | filter_noise_in_panel: Fix panel edge behaviour | Thomas White | |
2021-09-07 | lookup_panel: Check that panel name is not NULL | Thomas White | |
2021-09-07 | load_cell_from_file: Check fgets return value for first line | Thomas White | |
2021-09-06 | Meson: Get FDIP via a Wrap | Thomas White | |
2021-09-03 | Meson: Add libccp4c as a wrapped subproject | Thomas White | |
2021-09-03 | Fix typo and failing tests from previous commit | Thomas White | |
2021-09-03 | Reject geometry file if fs and ss directions are not specified | Thomas White | |
2021-08-20 | write_to_xds: Add missing 'S' (!) | Thomas White | |