| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2017-07-06 | Indexing engine private pointers should be void * | Thomas White | |
| 2017-07-06 | Update to peakfinder8, with bug fixed and new functionality. Code synced ↵ | Valerio Mariani | |
| with OnDA and Oleksandr's programs | |||
| 2017-07-05 | Update docs | Thomas White | |
| 2017-07-05 | Rearrange quaternion declarations so that gtk-doc can cope | Thomas White | |
| The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together. | |||
| 2017-06-27 | Dummy setup bits for INDEXING_NONE | Thomas White | |
| This doesn't do much except for preventing a possibly confusing warning message about "Failed to prepare indexing method none". You can actually do --indexing=none,asdf, but don't tell anyone... | |||
| 2017-06-27 | If prediction refinement fails, don't carry on and check the cell | Thomas White | |
| Doing so results in one crystal being counted as bad twice, which messes up the logic which follows. | |||
| 2017-06-23 | Accept either cbf/cbf.h or cbflib/cbf.h | Thomas White | |
| You get cbflib/cbf.h if you install CBFlib from source, and cbf/cbf.h if using the package manager in Fedora, probably other systems as well. We definitely don't want to include the cbf or cbflib folder in the include path, because CBFlib may bring its own HDF5 headers, which we don't want to touch with a bargepole. | |||
| 2017-06-21 | Close more leftover HDF5 handles | Thomas White | |
| 2017-06-21 | Don't compile CBF stuff without CBFlib | Thomas White | |
| 2017-06-21 | Close leftover HDF5 handles | Thomas White | |
| 2017-06-21 | hdf5_read2(): Fix exit path | Thomas White | |
| Bad pixel map is not allocated at this point. | |||
| 2017-05-09 | Allow reading CBF without geometry (only for simple viewing) | Thomas White | |
| 2017-05-09 | Add missing checks | Thomas White | |
| 2017-05-05 | Show filename of CBF file if it can't be read | Thomas White | |
| 2017-05-05 | Fill in photon energy, clen and adu for CBFs | Thomas White | |
| This needed a bit of reorganisation and clarification of who is repsonsible for loading what. The low-level file loaders, e.g. hdf5_read and hdf5_read2 in hdf5-file.c or cbf_read in image.c, are responsible. There is a helper function adjust_centering_for_rail in detector.h which they can use. It seems like this could be done more cleanly at the imagefile layer. However, we need to make sure that the "old" hdfile API still works on its own, even when not accessed via the new imagefile API. | |||
| 2017-05-05 | Allow location of photon energy (eg in HDF5 file) to start with any character | Thomas White | |
| 2017-05-05 | Read CBF data | Thomas White | |
| 2017-05-03 | Detect CBF files, interface bits | Thomas White | |
| 2017-05-03 | hdfile_set_image(): Remove panel argument | Thomas White | |
| Seems to have been added in 2014 and is not used at the moment | |||
| 2017-05-03 | HDF5 reading under new API | Thomas White | |
| 2017-05-02 | Skeleton image file API | Thomas White | |
| 2017-05-02 | Initial CBF stuff | Thomas White | |
| 2017-04-13 | Add half-pixel offset for peakfinder8 | Thomas White | |
| Like zaef, the pixel indices need to be converted to geometrical coordinates. This increases the indexing rate by about 5% in my test. | |||
| 2017-04-13 | hdf5_read2(): Free buffers when read fails | Thomas White | |
| 2017-03-31 | Offset peak locations from HDF5 or CXI files by 0.5,0.5 | Thomas White | |
| CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset. | |||
| 2017-03-24 | Remove an old debugging message | Thomas White | |
| 2017-03-24 | Propagate error if indexing method is unrecognised | Thomas White | |
| 2017-03-24 | Merge branch 'valerio/peakfinder8' | Thomas White | |
| 2017-03-24 | Mostly fussiness | Thomas White | |
| 2017-03-22 | Completely revamped implementation of peakfinder8 | Valerio Mariani | |
| 2017-03-15 | largest_q(): Handle NULL detector | Thomas White | |
| 2017-03-13 | Added management of max_num_peaks per image instead of per panel | Valerio Mariani | |
| 2017-03-13 | Added saturated peak management to peakfinder8 | Valerio Mariani | |
| 2017-03-13 | Ask for C99 in configure.ac, remove weird C99 declarations | Thomas White | |
| 2017-03-11 | Fixed some more bugs reported by Yaroslav | Valerio Mariani | |
| 2017-03-10 | Fixed a couple of bugs reported by Tom | Valerio Mariani | |
| 2017-03-10 | cell_print(): Show reciprocal angles | Thomas White | |
| 2017-03-10 | Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation | Valerio Mariani | |
| 2017-03-08 | Check unit cell parameters after prediction refinement | Thomas White | |
| 2017-03-08 | Allow indexing system to store its own data, independently of indexing methods | Thomas White | |
| Previously, the indexing system passed all the information on to the indexing engines and then forgot about it. That made it difficult to do things like check the indexing solution after prediction refinement, because the target unit cell was unavailable. Now, the indexing system itself can keep some information. Of course, that information includes the private pointers for the indexing engines themselves. I took the opportunity to streamline things a little bit. The caller can now set up the indexing system in one step, without having to separately parse the names of the indexing methods. The caller no longer has to keep track of a separate array of methods, instead just one structure which contains everything. | |||
| 2017-03-03 | Return error code if cell can't be inverted | Thomas White | |
| 2017-02-16 | Fix mask path placeholder check | Thomas White | |
| The mask paths for all panels have to have the same number of placeholders, but the masks do not have to have the same number of placeholders as the panel data blocks. This also tidies up a few excess strdup() calls, and removes partial_event_substitution() because retrieve_full_path() can now handle the number of placeholders being too small. | |||
| 2017-02-02 | indexamajig: Add ping mechanism to avoid timing out when trying lots of indexers | Thomas White | |
| 2017-02-01 | asdf.c: Divide volume constraints by number of lattice points per unit cell. ↵ | Alexandra Tolstikova | |
| Add F centering | |||
| 2017-02-01 | asdf.c: Divide volume constraints by number of lattice points per unit cell ↵ | Alexandra Tolstikova | |
| since asdf always finds primitive cell | |||
| 2017-02-01 | Fix malloc fail due to integer overflow in N_triplets | Alexandra Tolstikova | |
| 2017-02-01 | Change volume_min, volume_max and d_max when indexing=asdf-comb | Alexandra Tolstikova | |
| 2017-02-01 | Change d_max according to the provided cell | Alexandra Tolstikova | |
| 2016-12-09 | New polarisation correction | Thomas White | |
| 2016-11-25 | Display line numbers at which stream is corrupted | Thomas White | |
 |
index : CrystFEL | |
| Data processing for serial crystallography | Thomas White |
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path: root/libcrystfel