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2015-07-21Add random partiality modelThomas White
2015-07-21Update API docsThomas White
2015-07-20Use old MOSFLM indexing command when using -nocellThomas White
2015-07-18Merge branch 'master' of ssh://git.bitwiz.org.uk/crystfelThomas White
2015-07-17partialator: Detect (in a terminal fashion) NAN partialitiesThomas White
2015-07-17Fix format string for num_peaksThomas White
2015-07-17Load bandwidth from stream with correct unitsThomas White
D'oh!
2015-07-17Check that XDS indexing options are compatible with data provided by the userValerio Mariani
2015-07-16Check that sep is not null before checking its lengthValerio Mariani
2015-07-16Throw an error if the path data ends with a slashValerio mariani
2015-07-15Add warnings for asdf when compiled without FFTWThomas White
2015-07-14Fix HDF5 memory leaksThomas White
2015-07-13Slow down the status updatesThomas White
2015-07-10Temporary fix of infinite loop bug in asdf_reduce_cell()Alexandra Tolstikova
2015-07-09Tidy up error handling when given dodgy data locationsThomas White
2015-07-09Make noise filters use "dp" instead of "data"Thomas White
2015-07-08Move {x,y}_gradient to geometry.hThomas White
2015-07-08Remove unnecessary calculations from prediction refinementThomas White
2015-07-07Add mask_file to geometry file, to allow bad pixel mask to be stored separatelyThomas White
2015-07-03Delete trailing whitespaceThomas White
2015-06-26Plug some more leaksThomas White
2015-06-26Fix prediction refinement memory leaksThomas White
2015-06-26Free crystal notesThomas White
2015-06-26Work round unaligned read with DirAxThomas White
Ok, just to keep Valgrind quiet.
2015-06-25Move predict-refine to libcrystfelThomas White
2015-06-25Set MOSFLM default flags to include cell parameters, and add some checksThomas White
2015-06-25Try "mosflm" first, then try "ipmosflm" if it doesn't workThomas White
This allows a smooth transition from CCP4 to standalone version of mosflm, and hence an easy upgrade to newer versions.
2015-06-25Tidy up some small leaks and memory bugsThomas White
2015-06-24WhitespaceThomas White
2015-06-19Tidy up new MOSFLM codeThomas White
2015-06-19Send prior cell information to MOSFLM.Takanori Nakane
Prior-cell algorithm will be available in the next public relase of MOSFLM. (Old version of MOSFLM simply ignores prior-cell keywords so that this change doesn't do any harm)
2015-06-19Compile asdf only if FFTW is availableThomas White
2015-06-19Remove ReAx and GrainSpotterThomas White
Neither of these ever really worked, and better algorithms exist now.
2015-06-18Small tidying up for asdfThomas White
2015-06-18Merge branch 'tolstikova/dirax'Thomas White
Conflicts: libcrystfel/src/index.h
2015-06-18Fix bug in cell refinementAlexandra Tolstikova
2015-06-18Replace semaphore with a mutexThomas White
A mutex (in a shared memory segment) is the correct synchronisation primitive here. I had confused myself...
2015-06-17Check c->n after cell reductionAlexandra Tolstikova
2015-06-17Use a POSIX semaphore for synchronising terminal access during indexingThomas White
Nice side-effect: indexamajig -j and --int-diag can now be used together
2015-06-17Fix fft in[N] array subscript calculationAlexandra Tolstikova
2015-06-16Check malloc return valuesAlexandra Tolstikova
2015-06-11Fixes to syntax of events.h header fileValerio mariani
2015-06-09match_cell(): Tidy up error handling when given a bogus lattice typeThomas White
2015-05-27Add detector_has_clen_references()Thomas White
2015-05-19Set default crystal resolution limit to infinityThomas White
Makes much more sense than zero
2015-05-19Add {get,set}_flag()Thomas White
2015-05-19Don't attempt to calculate detector position without detector structureThomas White
... even if we are updating a previous reflection
2015-05-19Set panel when reading reflections from streamThomas White
2015-05-13partialator: Move scaling calculation into PR properThomas White
2015-05-13solve_svd(): Squash NaNs after rescalingThomas White
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