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2020-10-27Add a new StreamFlag for generating the detgeom structureThomas White
This is a hack, and should be replaced by something which gets the metadata from the stream rather than hitting the read image file every time.
2020-10-27image_set_zero_{data,mask}: Speed up creation of blank arraysThomas White
2020-10-27Fix a possibly overrun stringThomas White
2020-10-26Label all uses of cell tolerancesThomas White
I'm sick of fixing this same issue over and over again. New rule: any code handling unit cell tolerances MUST be labelled with details of units.
2020-10-22image_expand_frames: When files are not HDF5, just return null eventsThomas White
2020-10-22compare_cell_parameters: Accept R/P pair as equivalentThomas White
See 0f18ff76a3d1f5979db for some discussion.
2020-10-15Shuffle default order of indexing methodsThomas White
2020-10-15Add TakeTwo to the list of indexers automatically usedThomas White
2020-10-15TakeTwo: Limit number of seeds to 10, and reduce MAX_OBS_VECTORS to 300Thomas White
This gives a huge speed improvement, without sacrificing very much in indexing rate.
2020-10-07Revert "Move asdf out of set of indexers used by default"Thomas White
This reverts commit 62183aacf906f4aff771295aa378cff039dd50ff. The apparent slowness was due to a bug introduced in August 2019. See 2a8f415df845064186baa833f9fe1ad91c0f5753.
2020-10-07asdf: Fix incorrect units conversion for cell volumeThomas White
2020-10-07Formatting fussinessThomas White
2020-10-07Improve indexer speed profilingThomas White
2020-10-07FussinessThomas White
Commented out debug message is no longer relevant
2020-10-07TakeTwo: Set tp->optsThomas White
2020-10-07TakeTwo: Fix get_chiral_holohedry for "hexagonal H"Thomas White
Fixes CRYS-240
2020-10-06Move asdf out of set of indexers used by defaultThomas White
Sadly, it has the same fatal flaw as TakeTwo: taking forever on a minority of patterns.
2020-10-01asdf: Replace weird loop syntaxThomas White
2020-09-30image_expand_frames: Report non-existent file properlyThomas White
2020-09-25stream_make_index: s/Indexing/Scanning/Thomas White
Because it sounds strange and confusing to index the indexing results.
2020-09-24Fix old warning messageThomas White
2020-09-24Apply default unit scale factor only when value is from headersThomas White
Ugh.
2020-09-17CMake: Change LIBRARIES to LDFLAGSThomas White
Necessary after conversion to pkg-config search, to make sure that custom paths get used.
2020-09-17Add missing includeThomas White
2020-09-17Ensure that fs dimension has higher index than ssThomas White
Reading from HDF5 cannot rearrange dimensions, only select a chunk. Therefore, the layout in memory needs to match the file.
2020-09-16image_hdf5_read: Don't call image_freeThomas White
You didn't allocate it, so you don't free it.
2020-09-16Fix incorrect logic in HDF5 expansionThomas White
2020-09-11xgandalf: Remove C99-style 'for' declarationsThomas White
2020-09-10CMake: Don't compile image-msgpack.c if library is not foundThomas White
2020-09-09get_matrix_name: Improve string handlingThomas White
2020-09-09Add optional measurement of time spent in indexersThomas White
2020-09-08Remove "Command line:" in streamThomas White
This wasn't present in the old version, and it was missing a space anyway.
2020-09-08Un-export image_read_image_dataThomas White
Not needed since f5b3c4db36fa.
2020-09-07Catch another "NULL" event -> //Thomas White
2020-09-04stream_read_chunk: Set image->spectrumThomas White
2020-09-04stream_make_index: Don't require an event ID for every chunkThomas White
Event ID is not written if not needed
2020-09-04make_key: Handle NULL eventThomas White
2020-09-04New API for random access to streamThomas White
2020-09-02Get rid of STREAM_IMAGE_DATAThomas White
No longer needed, and didn't fit very well in the first place.
2020-08-27TakeTwo: Remove internal declarationsThomas White
2020-08-27Fix indentationThomas White
2020-08-27Only compile image-msgpack.c if MessagePack is foundThomas White
2020-08-25Factor out convert_intThomas White
2020-08-20Add default_method_options()Thomas White
This allows the indexing method private options structures to be set up easily.
2020-08-19Set the same initial beam parameters as beforeThomas White
2020-08-19Update old commentsThomas White
2020-08-19Remove STREAM_UNITCELL and STREAM_CRYSTALSThomas White
These flags weren't orthogonal at all, which was turning some routines into spaghetti-code. It's still possible to avoid read/write of peak lists, reflection data or image data. But that's it.
2020-08-19Const-cleaningThomas White
2020-08-19Make Stream responsible for its own DataTemplateThomas White
It makes no sense for a different DataTemplate to be used for every frame in a stream. And this way makes everything much easier for users ot the API.
2020-08-18Formatting/commentsThomas White
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